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    Suco SUN domain containing ossification factor [ Rattus norvegicus (Norway rat) ]

    Gene ID: 360863, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Sucoprovided by RGD
    Official Full Name
    SUN domain containing ossification factorprovided by RGD
    Primary source
    RGD:735185
    See related
    EnsemblRapid:ENSRNOG00000026542 AllianceGenome:RGD:735185
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Dd25
    Summary
    Predicted to be involved in positive regulation of collagen biosynthetic process; positive regulation of osteoblast differentiation; and regulation of bone remodeling. Predicted to be located in rough endoplasmic reticulum. Predicted to be active in cytoplasm and membrane. Orthologous to human SUCO (SUN domain containing ossification factor). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Adrenal (RPKM 174.6), Spleen (RPKM 156.4) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Suco in Genome Data Viewer
    Location:
    13q22
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (76726095..76791174, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (74192808..74257896, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (79736485..79801133, complement)

    Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102553985 Neighboring gene Fas ligand Neighboring gene uncharacterized LOC134481576 Neighboring gene uncharacterized LOC103692015

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Osteopotentia regulates osteoblast maturation, bone formation, and skeletal integrity in mice. Sohaskey ML, et al. J Cell Biol, 2010 May 3. PMID 20440000, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in ossification IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in positive regulation of collagen biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in positive regulation of collagen biosynthetic process ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in positive regulation of collagen biosynthetic process ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in positive regulation of osteoblast differentiation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in positive regulation of osteoblast differentiation ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in positive regulation of osteoblast differentiation ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in regulation of bone remodeling IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of bone remodeling IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of bone remodeling ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in regulation of bone remodeling ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in endomembrane system IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in rough endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in rough endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in rough endoplasmic reticulum ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in rough endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    SUN domain-containing ossification factor
    Names
    SUN-like protein 1
    hypothetical protein Dd25
    membrane protein CH1
    protein C1orf9 homolog
    protein osteopotentia homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_199403.4 → NP_955435.4  SUN domain-containing ossification factor precursor

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000013
      UniProtKB/TrEMBL
      A0A096MJ80
      Related
      ENSRNOP00000071346.3, ENSRNOT00000084058.3

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086031.1 Reference GRCr8

      Range
      76726095..76791174 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063272485.1 → XP_063128555.1  SUN domain-containing ossification factor isoform X6

      UniProtKB/TrEMBL
      A0A096MJ80

    2. XM_006250166.5 → XP_006250228.3  SUN domain-containing ossification factor isoform X5

      UniProtKB/TrEMBL
      A0A096MJ80

    3. XM_006250164.5 → XP_006250226.3  SUN domain-containing ossification factor isoform X3

      UniProtKB/TrEMBL
      A0A096MJ80

    4. XM_008769658.4 → XP_008767880.3  SUN domain-containing ossification factor isoform X4

      UniProtKB/TrEMBL
      A0A096MJ80

    5. XM_017598851.3 → XP_017454340.3  SUN domain-containing ossification factor isoform X2

      UniProtKB/TrEMBL
      A0A096MJ80

    6. XM_008769657.4 → XP_008767879.3  SUN domain-containing ossification factor isoform X1

      UniProtKB/TrEMBL
      A0A096MJ80
      Related
      ENSRNOP00000068027.3, ENSRNOT00000075936.4

    7. XM_039090908.2 → XP_038946836.2  SUN domain-containing ossification factor isoform X7

      UniProtKB/TrEMBL
      A0A096MJ80

    RNA

    1. XR_010056924.1 RNA Sequence

    2. XR_010056923.1 RNA Sequence

    3. XR_010056925.1 RNA Sequence

    4. XR_001840781.3 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q710E6.1 GenPept UniProtKB/Swiss-Prot:Q710E6

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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