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    DNAAF3-AS1 DNAAF3 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 101930593, updated on 10-Dec-2024

    Summary

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    Official Symbol
    DNAAF3-AS1provided by HGNC
    Official Full Name
    DNAAF3 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:55292
    See related
    Ensembl:ENSG00000267577 AllianceGenome:HGNC:55292
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in testis (RPKM 12.1), lung (RPKM 3.6) and 4 other tissues See more
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    Genomic context

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    See DNAAF3-AS1 in Genome Data Viewer
    Location:
    19q13.42
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (55159309..55166904)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (58253398..58260969)

    Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene troponin T1, slow skeletal type Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15077 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr19:55652829-55653333 Neighboring gene troponin I3, cardiac type Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:55668291-55668878 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11016 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:55672120-55673046 Neighboring gene dynein axonemal assembly factor 3 Neighboring gene ReSE screen-validated silencer GRCh37_chr19:55677361-55677592 Neighboring gene small nucleolar RNA U13 Neighboring gene synaptotagmin 5 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15078 Neighboring gene ReSE screen-validated silencer GRCh37_chr19:55691190-55691602

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

      Range
      55159309..55166904
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007067344.1 RNA Sequence

    2. XR_007067345.1 RNA Sequence

    3. XR_001754014.2 RNA Sequence

      Related
      ENST00000805277.1

    4. XR_007067343.1 RNA Sequence

    5. XR_001754015.2 RNA Sequence

    6. XR_936074.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060943.1 Alternate T2T-CHM13v2.0

      Range
      58253398..58260969
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007089264.1 RNA Sequence

    2. XR_007089260.1 RNA Sequence

    3. XR_007089261.1 RNA Sequence

    4. XR_007089262.1 RNA Sequence

    5. XR_007089263.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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