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    Fam13a family with sequence similarity 13, member A [ Mus musculus (house mouse) ]

    Gene ID: 58909, updated on 9-Dec-2024

    Summary

    Official Symbol
    Fam13aprovided by MGI
    Official Full Name
    family with sequence similarity 13, member Aprovided by MGI
    Primary source
    MGI:MGI:1889842
    See related
    Ensembl:ENSMUSG00000037709 AllianceGenome:MGI:1889842
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Precm1; FAM13A1; D430015B01Rik
    Summary
    Human ortholog(s) of this gene implicated in chronic obstructive pulmonary disease. Orthologous to human FAM13A (family with sequence similarity 13 member A). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Broad expression in mammary gland adult (RPKM 11.1), kidney adult (RPKM 10.9) and 24 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Fam13a in Genome Data Viewer
    Location:
    6 B3; 6 27.93 cM
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (58910521..59001487, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (58933536..59024502, complement)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 38822 Neighboring gene STARR-seq mESC enhancer starr_16024 Neighboring gene STARR-seq mESC enhancer starr_16025 Neighboring gene STARR-seq mESC enhancer starr_16026 Neighboring gene STARR-seq mESC enhancer starr_16027 Neighboring gene hect domain and RLD 3 Neighboring gene STARR-seq mESC enhancer starr_16029 Neighboring gene nucleosome assembly protein 1-like 5 Neighboring gene RIKEN cDNA 8430415O14 gene Neighboring gene TPX2, microtubule-associated protein homolog pseudogene Neighboring gene predicted gene, 22367

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 
    • Targeted (6)  1 citation

    Pathways from PubChem

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_153574.2NP_705802.1  protein FAM13A

      See identical proteins and their annotated locations for NP_705802.1

      Status: VALIDATED

      Source sequence(s)
      BC080861, BE135986
      Consensus CDS
      CCDS39499.1
      UniProtKB/Swiss-Prot
      Q8BGI4, Q8BZ91
      UniProtKB/TrEMBL
      G3UYL7
      Related
      ENSMUSP00000087304.6, ENSMUST00000089860.12

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      58910521..59001487 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)