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    Rhox9 reproductive homeobox 9 [ Mus musculus (house mouse) ]

    Gene ID: 104384, updated on 9-Dec-2024

    Summary

    Official Symbol
    Rhox9provided by MGI
    Official Full Name
    reproductive homeobox 9provided by MGI
    Primary source
    MGI:MGI:1890128
    See related
    Ensembl:ENSMUSG00000068048 AllianceGenome:MGI:1890128
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Psx2; Gpbox; 1600026O01Rik
    Summary
    Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in genitourinary system. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward placenta adult (RPKM 272.5) See more
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    Genomic context

    See Rhox9 in Genome Data Viewer
    Location:
    X A3.3; X 22.15 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (36987974..36990647, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (37899097..37901770, complement)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene reproductive homeobox 7A Neighboring gene reproductive homeobox 8 Neighboring gene reproductive homeobox 7B Neighboring gene STARR-seq mESC enhancer starr_47011 Neighboring gene reproductive homeobox 11, pseudogene 1 Neighboring gene reproductive homeobox 11, pseudogene 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Clone Names

    • MGC107479

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    reproductive homeobox on X chromosome, 9
    Names
    placenta specific homeobox 2
    trophoblast-specific homeobox protein PSX2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_023894.1NP_076383.1  reproductive homeobox on X chromosome, 9

      See identical proteins and their annotated locations for NP_076383.1

      Status: VALIDATED

      Source sequence(s)
      AF201698
      Consensus CDS
      CCDS30083.1
      UniProtKB/TrEMBL
      A0A7R5SDM4, Q9EQM5
      Related
      ENSMUSP00000086462.7, ENSMUST00000089062.8
      Conserved Domains (1) summary
      pfam00046
      Location:154207
      Homeobox; Homeobox domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      36987974..36990647 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)