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    BC031181 cDNA sequence BC031181 [ Mus musculus (house mouse) ]

    Gene ID: 407819, updated on 27-Nov-2024

    Summary

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    Official Symbol
    BC031181provided by MGI
    Official Full Name
    cDNA sequence BC031181provided by MGI
    Primary source
    MGI:MGI:3039614
    See related
    Ensembl:ENSMUSG00000036299 AllianceGenome:MGI:3039614
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to be located in endoplasmic reticulum and lipid droplet. Is expressed in central nervous system and retina. Orthologous to human C18orf32 (chromosome 18 open reading frame 32). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in CNS E14 (RPKM 40.0), CNS E18 (RPKM 39.0) and 28 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See BC031181 in Genome Data Viewer
    Location:
    18 E3; 18 50.96 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (75138910..75143006)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (75005839..75009935)

    Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E7609 Neighboring gene STARR-positive B cell enhancer ABC_E7610 Neighboring gene predicted gene, 23301 Neighboring gene predicted gene, 26202 Neighboring gene ribosomal protein L17 Neighboring gene dymeclin Neighboring gene STARR-seq mESC enhancer starr_45027 Neighboring gene predicted gene, 52344 Neighboring gene ATP synthase subunit d, mitochondrial pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Characterization of an exchangeable gene trap using pU-17 carrying a stop codon-beta geo cassette. Taniwaki T, et al. Dev Growth Differ, 2005 Apr. PMID 15840001
    2. Exchangeable gene trap using the Cre/mutated lox system. Araki K, et al. Cell Mol Biol (Noisy-le-grand), 1999 Jul. PMID 10512203
    3. BioID screening of biotinylation sites using the avidin-like protein Tamavidin 2-REV identifies global interactors of stimulator of interferon genes (STING). Motani K, et al. J Biol Chem, 2020 Aug 7. PMID 32554809, Free PMC Article
    4. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
    5. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article

    See all (21) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    located_in endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in endoplasmic reticulum ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in lipid droplet ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in lipid droplet ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    UPF0729 protein C18orf32 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001001181.4 → NP_001001181.1  UPF0729 protein C18orf32 homolog isoform 1

      See identical proteins and their annotated locations for NP_001001181.1

      Status: VALIDATED

      Source sequence(s)
      BC016084, BY129096, BY512913
      Consensus CDS
      CCDS37859.1
      UniProtKB/Swiss-Prot
      Q3V3U8, Q91WE4
      Related
      ENSMUSP00000158256.2, ENSMUST00000237263.2
      Conserved Domains (1) summary
      pfam14975
      Location:2 → 42
      DUF4512; Domain of unknown function (DUF4512)

    2. NM_001358303.1 → NP_001345232.1  UPF0729 protein C18orf32 homolog isoform 1

      Status: VALIDATED

      Source sequence(s)
      AK077642, BY129096, BY512913
      Consensus CDS
      CCDS37859.1
      UniProtKB/Swiss-Prot
      Q3V3U8, Q91WE4
      Related
      ENSMUSP00000040450.5, ENSMUST00000040284.6
      Conserved Domains (1) summary
      pfam14975
      Location:2 → 42
      DUF4512; Domain of unknown function (DUF4512)

    3. NM_001358304.1 → NP_001345233.1  UPF0729 protein C18orf32 homolog isoform 1

      Status: VALIDATED

      Source sequence(s)
      BY129096, BY512913, CK620827
      Consensus CDS
      CCDS37859.1
      UniProtKB/Swiss-Prot
      Q3V3U8, Q91WE4
      Related
      ENSMUSP00000157657.2, ENSMUST00000236421.2
      Conserved Domains (1) summary
      pfam14975
      Location:2 → 42
      DUF4512; Domain of unknown function (DUF4512)

    4. NM_001358305.1 → NP_001345234.1  UPF0729 protein C18orf32 homolog isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC125122
      Consensus CDS
      CCDS37859.1
      UniProtKB/Swiss-Prot
      Q3V3U8, Q91WE4
      Conserved Domains (1) summary
      pfam14975
      Location:2 → 42
      DUF4512; Domain of unknown function (DUF4512)

    5. NM_001358306.1 → NP_001345235.1  UPF0729 protein C18orf32 homolog isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC125122
      Conserved Domains (1) summary
      pfam14975
      Location:25 → 65
      DUF4512; Domain of unknown function (DUF4512)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000084.7 Reference GRCm39 C57BL/6J

      Range
      75138910..75143006
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q91WE4.1 GenPept UniProtKB/Swiss-Prot:Q91WE4

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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