Lcnl Lipocalin like [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Lcnlprovided by RGD
Official Full Name: Lipocalin likeprovided by RGD
Primary source: RGD:1583505
See related: AllianceGenome:RGD:1583505
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Predicted to enable small molecule binding activity. Predicted to be located in extracellular region. [provided by Alliance of Genome Resources, Dec 2024]
Expression: Biased expression in Adrenal (RPKM 4.5), Thymus (RPKM 3.8) and 8 other tissues See more
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Genomic context

Location:: 3p13

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	3	NC_086021.1 (29870542..29875304)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	3	NC_051338.1 (9472456..9477218)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	3	NC_005102.4 (4095698..4104349)

Chromosome 3 - NC_086021.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables small molecule binding	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: uncharacterized protein LOC681186

Names: rCG45447-like; vomeronasal secretory protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001408963.1 → NP_001395892.1 uncharacterized protein LOC681186 precursor

Status: VALIDATED

Source sequence(s)

JAXUCZ010000003

UniProtKB/TrEMBL

A0A8I5ZT42

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086021.1 Reference GRCr8

Range

29870542..29875304

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_063284546.1 → XP_063140616.1 uncharacterized protein LOC681186 isoform X1
XM_063284547.1 → XP_063140617.1 uncharacterized protein LOC681186 isoform X2
XM_063284548.1 → XP_063140618.1 uncharacterized protein LOC681186 isoform X3

UniProtKB/TrEMBL

A6JTH1