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    Vom1r80 vomeronasal 1 receptor 80 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 494238, updated on 9-Dec-2024

    Summary

    Symbol
    Vom1r80provided by RGD
    Full Name
    vomeronasal 1 receptor 80provided by RGD
    Primary source
    RGD:1549747
    See related
    AllianceGenome:RGD:1549747
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    V1rc38
    Summary
    Predicted to enable pheromone receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; response to pheromone; and sensory perception of chemical stimulus. Predicted to be located in plasma membrane. Orthologous to human VN1R5 (vomeronasal 1 receptor 5 (gene/pseudogene)). [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

    See Vom1r80 in Genome Data Viewer
    Location:
    4q24
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (88285097..88285996)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (86954934..86955833)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (88026033..88026932)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene vomeronasal 1 receptor 78 Neighboring gene vomeronasal 1 receptor 79 Neighboring gene tubulin, gamma 1, pseudogene 4 Neighboring gene vomeronasal 1 receptor 81

    Genomic regions, transcripts, and products

    General gene information

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables pheromone receptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in response to pheromone IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in sensory perception of chemical stimulus IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    vomeronasal 1 receptor 80
    Names
    vomernasal 1 receptor Vom1r80
    vomeronasal 1 receptor, C38
    vomeronasal V1r-type receptor V1rc38
    vomeronasal type-1 receptor 90

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001009518.2NP_001009518.2  vomeronasal 1 receptor 80

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000004
      UniProtKB/TrEMBL
      A0A8I6AH84

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      88285097..88285996
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)