Cmtm1 CKLF-like MARVEL transmembrane domain containing 1 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Cmtm1provided by RGD
Official Full Name: CKLF-like MARVEL transmembrane domain containing 1provided by RGD
Primary source: RGD:1560130
See related: EnsemblRapid:ENSRNOG00000057711 AllianceGenome:RGD:1560130
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Predicted to be active in membrane. Orthologous to human CMTM1 (CKLF like MARVEL transmembrane domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Restricted expression toward (RPKM 113.8) See more
Orthologs: human mouse all
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Genomic context

Location:: 19p14

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	19	NC_086037.1 (658075..667618, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	19	NC_051354.1 (651641..661184, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	19	NC_005118.4 (849145..869508, complement)

Chromosome 19 - NC_086037.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Component	Evidence Code	Pubs
is_active_in membrane	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: CKLF-like MARVEL transmembrane domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001029914.1 → NP_001025085.1 CKLF-like MARVEL transmembrane domain-containing protein 1

See identical proteins and their annotated locations for NP_001025085.1

Status: PROVISIONAL

Source sequence(s)

BC098029

UniProtKB/TrEMBL

A0A8I6A5X9, Q4QQS9

Related

ENSRNOP00000070371.1, ENSRNOT00000080433.3

Conserved Domains (2) summary

pfam01284
Location:254 → 370

MARVEL; Membrane-associating domain

pfam09786
Location:53 → 161

CytochromB561_N; Cytochrome B561, N terminal