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    Zfp566 zinc finger protein 566 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 502316, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Zfp566provided by RGD
    Official Full Name
    zinc finger protein 566provided by RGD
    Primary source
    RGD:1563239
    See related
    EnsemblRapid:ENSRNOG00000048138 AllianceGenome:RGD:1563239
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1563239
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF566 (zinc finger protein 566). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Lung (RPKM 39.8), Muscle (RPKM 37.9) and 9 other tissues See more
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    Genomic context

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    See Zfp566 in Genome Data Viewer
    Location:
    1q21
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (94445850..94461215, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (85318449..85342186, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (88407903..88413209, complement)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 82 Neighboring gene DEAD-box helicase 18 like 1 Neighboring gene small nucleolar RNA SNORA5 Neighboring gene zinc finger protein 260 Neighboring gene zinc finger protein 382

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC189408

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein 566

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001134726.1 → NP_001128198.1  zinc finger protein 566

      See identical proteins and their annotated locations for NP_001128198.1

      Status: PROVISIONAL

      Source sequence(s)
      BC167072
      UniProtKB/TrEMBL
      B2RZ94, M0R4E4
      Related
      ENSRNOP00000064228.4, ENSRNOT00000074582.4
      Conserved Domains (4) summary
      COG5048
      Location:193 → 355
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:225 → 245
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:167 → 189
      zf-C2H2; Zinc finger, C2H2 type
      pfam01352
      Location:5 → 45
      KRAB; KRAB box

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      94445850..94461215 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039088292.2 → XP_038944220.1  zinc finger protein 566 isoform X2

      Conserved Domains (3) summary
      COG5048
      Location:127 → 289
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:159 → 179
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:101 → 123
      zf-C2H2; Zinc finger, C2H2 type

    2. XM_039088295.2 → XP_038944223.1  zinc finger protein 566 isoform X2

      Conserved Domains (3) summary
      COG5048
      Location:127 → 289
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:159 → 179
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:101 → 123
      zf-C2H2; Zinc finger, C2H2 type

    3. XM_039088277.2 → XP_038944205.1  zinc finger protein 566 isoform X1

      UniProtKB/TrEMBL
      B2RZ94, M0R4E4
      Conserved Domains (4) summary
      COG5048
      Location:193 → 355
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:225 → 245
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:167 → 189
      zf-C2H2; Zinc finger, C2H2 type
      pfam01352
      Location:5 → 45
      KRAB; KRAB box

    4. XM_063271859.1 → XP_063127929.1  zinc finger protein 566 isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version

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