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    KHDC4 KH domain containing 4, pre-mRNA splicing factor [ Bos taurus (domestic cattle) ]

    Gene ID: 530205, updated on 27-Dec-2024

    Summary

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    Official Symbol
    KHDC4provided by VGNC
    Official Full Name
    KH domain containing 4, pre-mRNA splicing factorprovided by VGNC
    Primary source
    VGNC:VGNC:30559
    See related
    Ensembl:ENSBTAG00000000108
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    KIAA0907
    Orthologs
    human mouse all
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    Genomic context

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    See KHDC4 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 3 NC_037330.1 (14834847..14852133)

    Chromosome 3 - NC_037330.1Genomic Context describing neighboring genes Neighboring gene Rho/Rac guanine nucleotide exchange factor 2 Neighboring gene relaxin family peptide/INSL5 receptor 4 Neighboring gene small Cajal body-specific RNA 4 Neighboring gene small nucleolar RNA SNORA42/SNORA80 family Neighboring gene Ras like without CAAX 1 Neighboring gene synaptotagmin 11

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037330.1 Chromosome 3 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC137767

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    KH homology domain-containing protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001434749.1 → NP_001421678.1  KH homology domain-containing protein 4 isoform 1

      Status: VALIDATED

      Source sequence(s)
      NKLS02000003

    2. NM_001434750.1 → NP_001421679.1  KH homology domain-containing protein 4 isoform 2

      Status: VALIDATED

      Source sequence(s)
      NKLS02000003

    RNA

    1. NR_197958.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      NKLS02000003

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037330.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      14834847..14852133
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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