These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

1. NM_001101867.3 → NP_001095337.1  EMI domain-containing protein 1 isoform 1 precursor

   See identical proteins and their annotated locations for NP_001095337.1

   Status: VALIDATED

   Description

   Transcript Variant: This variant (1) encodes the longer isoform (1).

   Source sequence(s)

   BC149314, EV731510

   UniProtKB/TrEMBL

   A6QPG8, F1MNZ8

   Related

   ENSBTAP00070025409.1, ENSBTAT00070042551.1

   Conserved Domains (2) summary

   pfam01391
   Location:352 → 387

   Collagen; Collagen triple helix repeat (20 copies)

   pfam07546
   Location:35 → 100

   EMI; EMI domain

2. NM_001278654.1 → NP_001265583.1  EMI domain-containing protein 1 isoform 2 precursor

   Status: VALIDATED

   Description

   Transcript Variant: This variant (2) lacks one exon and contains an alternate exon in the 3' coding region, compared to variant 1. The encoded isoform (2) is shorter, compared to isoform 1.

   Source sequence(s)

   BC149314, EH174835, EV731510

   UniProtKB/TrEMBL

   A0A3Q1M651

   Related

   ENSBTAP00070025418.1, ENSBTAT00070042567.1

   Conserved Domains (2) summary

   pfam01391
   Location:352 → 387

   Collagen; Collagen triple helix repeat (20 copies)

   pfam07546
   Location:35 → 100

   EMI; EMI domain

RNA

1. NR_103815.1 RNA Sequence

   Status: VALIDATED

   Description

   Transcript Variant: This variant (3) contains an alternate internal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).

   Source sequence(s)

   BC149314, EH174835, EV731510

The following sections contain reference sequences that belong to a specific genome build. Explain

This section includes genomic Reference Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate assemblies. Model RNAs and proteins are also reported here.

Reference ARS-UCD2.0 Primary Assembly

Genomic

1. NC_037344.1 Reference ARS-UCD2.0 Primary Assembly

   Range

   68507363..68547592

   Download

   GenBank, FASTA, Sequence Viewer (Graphics)