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    SND1 staphylococcal nuclease and tudor domain containing 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 404098, updated on 27-Dec-2024

    Summary

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    Official Symbol
    SND1provided by VGNC
    Official Full Name
    staphylococcal nuclease and tudor domain containing 1provided by VGNC
    Primary source
    VGNC:VGNC:35063
    See related
    BGD:BT25068; Ensembl:ENSBTAG00000010692
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See SND1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 4 NC_037331.1 (91873942..92296112)

    Chromosome 4 - NC_037331.1Genomic Context describing neighboring genes Neighboring gene fascin actin-bundling protein 3 Neighboring gene paired box 4 Neighboring gene leucine rich repeat containing 4 Neighboring gene transfer RNA cysteine (anticodon ACA) Neighboring gene microRNA mir-129-1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037331.1 Chromosome 4 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Tudor-SN Regulates Milk Synthesis and Proliferation of Bovine Mammary Epithelial Cells. Ao J, et al. Int J Mol Sci, 2015 Dec 16. PMID 26694361, Free PMC Article
    2. The p100 EBNA-2 coactivator: a highly conserved protein found in a range of exocrine and endocrine cells and tissues in cattle. Broadhurst MK, et al. Biochim Biophys Acta, 2005 Jan 11. PMID 15627504
    3. The p100 coactivator is present in the nuclei of mammary epithelial cells and its abundance is increased in response to prolactin in culture and in mammary tissue during lactation. Broadhurst MK, et al. J Endocrinol, 2001 Nov. PMID 11691653
    4. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC129117

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulatory ncRNA-mediated gene silencing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of RISC complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    staphylococcal nuclease domain-containing protein 1
    Names
    100 kDa coactivator
    p100 co-activator
    NP_991353.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_205784.1 → NP_991353.1  staphylococcal nuclease domain-containing protein 1

      See identical proteins and their annotated locations for NP_991353.1

      Status: PROVISIONAL

      Source sequence(s)
      AY273893
      UniProtKB/Swiss-Prot
      Q3MHZ9, Q863B3
      UniProtKB/TrEMBL
      A0AAA9SP67
      Related
      ENSBTAP00000014154.5, ENSBTAT00000014154.7
      Conserved Domains (5) summary
      smart00333
      Location:728 → 784
      TUDOR; Tudor domain
      smart00318
      Location:21 → 166
      SNc; Staphylococcal nuclease homologues
      cd00175
      Location:26 → 166
      SNc; Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds.
      pfam00567
      Location:677 → 799
      TUDOR; Tudor domain
      cl00140
      Location:844 → 895
      SNc; Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds.

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037331.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      91873942..92296112
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q863B3.1 GenPept UniProtKB/Swiss-Prot:Q863B3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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    Research Materials