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    SSRP1 structure specific recognition protein 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 282082, updated on 30-Jan-2025

    Summary

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    Official Symbol
    SSRP1provided by VGNC
    Official Full Name
    structure specific recognition protein 1provided by VGNC
    Primary source
    VGNC:VGNC:35323
    See related
    BGD:BT20528; EnsemblRapid:ENSBTAG00070030186
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See SSRP1 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 15 NC_037342.1 (80527401..80537443, complement)

    Chromosome 15 - NC_037342.1Genomic Context describing neighboring genes Neighboring gene apelin receptor Neighboring gene tankyrase 1 binding protein 1 Neighboring gene microRNA mir-12046 Neighboring gene purinergic receptor P2X 3 Neighboring gene proteoglycan 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037342.1 Chromosome 15 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Characterisation of bovine structure-specific recognition protein 1 (SSRP1) cDNA. Nielsen PK, et al. Biochem Mol Biol Int, 1997 Nov. PMID 9385438
    2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleosome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of chromatin organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of FACT complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    FACT complex subunit SSRP1
    Names
    Structure-specific recognition protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001101041.1 → NP_001094511.1  FACT complex subunit SSRP1

      See identical proteins and their annotated locations for NP_001094511.1

      Status: PROVISIONAL

      Source sequence(s)
      BC149985
      UniProtKB/TrEMBL
      A6QQT5, F6QYV9
      Related
      ENSBTAP00070041842.1, ENSBTAT00070068485.1
      Conserved Domains (4) summary
      COG5165
      Location:21 → 480
      POB3; Nucleosome-binding factor SPN, POB3 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
      cd13231
      Location:332 → 427
      PH2_SSRP1-like; Structure Specific Recognition protein 1 (SSRP1) Pleckstrin homology (PH) domain, repeat 2
      pfam00505
      Location:547 → 614
      HMG_box; HMG (high mobility group) box
      pfam03531
      Location:75 → 284
      SSrecog; Structure-specific recognition protein (SSRP1)

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037342.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      80527401..80537443 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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