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    KATNB1 katanin regulatory subunit B1 [ Bos taurus (domestic cattle) ]

    Gene ID: 508813, updated on 30-Jan-2025

    Summary

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    Official Symbol
    KATNB1provided by VGNC
    Official Full Name
    katanin regulatory subunit B1provided by VGNC
    Primary source
    VGNC:VGNC:30408
    See related
    BGD:BT12414; EnsemblRapid:ENSBTAG00070020237
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See KATNB1 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 18 NC_037345.1 (25703245..25721212)

    Chromosome 18 - NC_037345.1Genomic Context describing neighboring genes Neighboring gene adhesion G protein-coupled receptor G3 Neighboring gene uncharacterized LOC132342812 Neighboring gene dynein regulatory complex subunit 7 Neighboring gene kinesin family member C3 Neighboring gene uncharacterized LOC112442291 Neighboring gene uncharacterized LOC132342813

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037345.1 Chromosome 18 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC165864

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in microtubule depolymerization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in microtubule severing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of katanin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    katanin p80 WD40 repeat-containing subunit B1
    Names
    katanin p80 (WD repeat containing) subunit B 1
    katanin p80 (WD40-containing) subunit B 1
    katanin p80 subunit B 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001101909.2 → NP_001095379.1  katanin p80 WD40 repeat-containing subunit B1

      See identical proteins and their annotated locations for NP_001095379.1

      Status: PROVISIONAL

      Source sequence(s)
      BC149991
      UniProtKB/TrEMBL
      A0A3S5ZPU6, A6QQU1, F1MVM3
      Related
      ENSBTAP00070027391.1, ENSBTAT00070045666.1
      Conserved Domains (4) summary
      COG2319
      Location:6 → 295
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:7 → 257
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam13925
      Location:505 → 656
      Katanin_con80; con80 domain of Katanin
      sd00039
      Location:67 → 103
      7WD40; WD40 repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037345.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      25703245..25721212
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005218500.5 → XP_005218557.1  katanin p80 WD40 repeat-containing subunit B1 isoform X1

      See identical proteins and their annotated locations for XP_005218557.1

      UniProtKB/TrEMBL
      A0A3Q1LYK8
      Related
      ENSBTAP00070027402.1, ENSBTAT00070045697.1
      Conserved Domains (5) summary
      cd00200
      Location:74 → 283
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:93 → 129
      7WD40; WD40 repeat [structural motif]
      pfam13925
      Location:531 → 682
      Katanin_con80; con80 domain of Katanin
      cl25800
      Location:423 → 496
      GGN; Gametogenetin
      cl26464
      Location:333 → 514
      Atrophin-1; Atrophin-1 family

    2. XM_005218502.5 → XP_005218559.1  katanin p80 WD40 repeat-containing subunit B1 isoform X2

      See identical proteins and their annotated locations for XP_005218559.1

      UniProtKB/TrEMBL
      A0A3S5ZPU6, A6QQU1, F1MVM3
      Conserved Domains (4) summary
      COG2319
      Location:6 → 295
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:7 → 257
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam13925
      Location:505 → 656
      Katanin_con80; con80 domain of Katanin
      sd00039
      Location:67 → 103
      7WD40; WD40 repeat [structural motif]

    3. XM_005218501.5 → XP_005218558.1  katanin p80 WD40 repeat-containing subunit B1 isoform X1

      See identical proteins and their annotated locations for XP_005218558.1

      UniProtKB/TrEMBL
      A0A3Q1LYK8
      Conserved Domains (5) summary
      cd00200
      Location:74 → 283
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:93 → 129
      7WD40; WD40 repeat [structural motif]
      pfam13925
      Location:531 → 682
      Katanin_con80; con80 domain of Katanin
      cl25800
      Location:423 → 496
      GGN; Gametogenetin
      cl26464
      Location:333 → 514
      Atrophin-1; Atrophin-1 family
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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