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    XPOT exportin for tRNA [ Bos taurus (domestic cattle) ]

    Gene ID: 535264, updated on 27-Dec-2024

    Summary

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    Official Symbol
    XPOTprovided by VGNC
    Official Full Name
    exportin for tRNAprovided by VGNC
    Primary source
    VGNC:VGNC:37002
    See related
    BGD:BT13929; Ensembl:ENSBTAG00000026962
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See XPOT in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (49320231..49488743, complement)

    Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene Ras association domain family member 3 Neighboring gene microRNA mir-2285f-1 Neighboring gene TANK binding kinase 1 Neighboring gene chromosome 5 C12orf56 homolog Neighboring gene transfer RNA phenylalanine (anticodon AAA) Neighboring gene KICSTOR subunit 2 Neighboring gene SLIT-ROBO Rho GTPase activating protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables small GTPase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables tRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in tRNA re-export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nuclear matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    exportin-T
    Names
    exportin, tRNA (nuclear export receptor for tRNAs)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001206076.1 → NP_001193005.1  exportin-T

      See identical proteins and their annotated locations for NP_001193005.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000005
      UniProtKB/TrEMBL
      E1B8Q8
      Related
      ENSBTAP00000038398.6, ENSBTAT00000038585.6
      Conserved Domains (2) summary
      smart00913
      Location:21 → 88
      IBN_N; Importin-beta N-terminal domain
      pfam08389
      Location:100 → 247
      Xpo1; Exportin 1-like protein

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      49320231..49488743 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059886554.1 → XP_059742537.1  exportin-T isoform X1

      UniProtKB/TrEMBL
      E1B8Q8

    2. XM_059886555.1 → XP_059742538.1  exportin-T isoform X1

      UniProtKB/TrEMBL
      E1B8Q8

    3. XM_059886552.1 → XP_059742535.1  exportin-T isoform X1

      UniProtKB/TrEMBL
      E1B8Q8

    4. XM_059886553.1 → XP_059742536.1  exportin-T isoform X1

      UniProtKB/TrEMBL
      E1B8Q8

    5. XM_059886556.1 → XP_059742539.1  exportin-T isoform X2

      UniProtKB/TrEMBL
      E1B8Q8
    Nucleotide Protein Strain
    Heading Accession and Version

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