U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    COL17A1 collagen type XVII alpha 1 chain [ Bos taurus (domestic cattle) ]

    Gene ID: 513804, updated on 1-Jan-2025

    Summary

    Go to the top of the page Help
    Official Symbol
    COL17A1provided by VGNC
    Official Full Name
    collagen type XVII alpha 1 chainprovided by VGNC
    Primary source
    VGNC:VGNC:27558
    See related
    BGD:BT10482; Ensembl:ENSBTAG00000002430
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    BP180; BPAG2
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See COL17A1 in Genome Data Viewer
    Location:
    chromosome: 26
    Exon count:
    56
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 26 NC_037353.1 (24591190..24638064, complement)

    Chromosome 26 - NC_037353.1Genomic Context describing neighboring genes Neighboring gene STN1 subunit of CST complex Neighboring gene STE20 like kinase Neighboring gene cilia and flagella associated protein 43 Neighboring gene SWI5 dependent homologous recombination repair protein 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037353.1 Chromosome 26 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Cleavage of BP180, a 180-kDa bullous pemphigoid antigen, yields a 120-kDa collagenous extracellular polypeptide. Hirako Y, et al. J Biol Chem, 1998 Apr 17. PMID 9545306
    2. Extracellular cleavage of bullous pemphigoid antigen 180/type XVII collagen and its involvement in hemidesmosomal disassembly. Hirako Y, et al. J Biochem, 2003 Feb. PMID 12761182
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Clone Names

    • MGC155048

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables extracellular matrix structural constituent conferring tensile strength IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in extracellular matrix organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in collagen-containing extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    collagen alpha-1(XVII) chain
    Names
    180 kDa bullous pemphigoid antigen 2
    bullous pemphigoid antigen 180
    bullous pemphigoid antigen 2
    collagen, type XVII, alpha 1
    type XVII collagen alpha-1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001101980.1 → NP_001095450.1  collagen alpha-1(XVII) chain

      See identical proteins and their annotated locations for NP_001095450.1

      Status: PROVISIONAL

      Source sequence(s)
      BC149236
      UniProtKB/Swiss-Prot
      A6QPB3
      UniProtKB/TrEMBL
      A0A3Q1LSB9
      Conserved Domains (1) summary
      pfam01391
      Location:710 → 772
      Collagen; Collagen triple helix repeat (20 copies)

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037353.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      24591190..24638064 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005225524.5 → XP_005225581.2  collagen alpha-1(XVII) chain isoform X1

      UniProtKB/TrEMBL
      A0A3Q1LSB9, A0A452DIB7, W0SK50
      Related
      ENSBTAP00000013271.7, ENSBTAT00000013271.7
      Conserved Domains (1) summary
      pfam01391
      Location:722 → 784
      Collagen; Collagen triple helix repeat (20 copies)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A6QPB3.1 GenPept UniProtKB/Swiss-Prot:A6QPB3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.