U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ZSCAN12 zinc finger and SCAN domain containing 12 [ Bos taurus (domestic cattle) ]

    Gene ID: 768084, updated on 1-Jan-2025

    Summary

    Go to the top of the page Help
    Official Symbol
    ZSCAN12provided by VGNC
    Official Full Name
    zinc finger and SCAN domain containing 12provided by VGNC
    Primary source
    VGNC:VGNC:49996
    See related
    BGD:BT19127; Ensembl:ENSBTAG00000008943
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    ZNF96
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ZSCAN12 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 23 NC_037350.1 (30335249..30358674)

    Chromosome 23 - NC_037350.1Genomic Context describing neighboring genes Neighboring gene transfer RNA phenylalanine (anticodon GAA) Neighboring gene zinc finger and SCAN domain containing 23 Neighboring gene zinc finger and SCAN domain containing 31 Neighboring gene small nucleolar RNA SNORA31

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037350.1 Chromosome 23 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Clone Names

    • MGC139538

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of PcG protein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    zinc finger and SCAN domain-containing protein 12
    Names
    zinc finger protein 96

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001077138.1 → NP_001070606.1  zinc finger and SCAN domain-containing protein 12

      See identical proteins and their annotated locations for NP_001070606.1

      Status: PROVISIONAL

      Source sequence(s)
      BC123401
      UniProtKB/TrEMBL
      Q08E61
      Related
      ENSBTAP00000011774.5, ENSBTAT00000011774.6
      Conserved Domains (6) summary
      smart00431
      Location:48 → 158
      SCAN; leucine rich region
      COG5048
      Location:274 → 608
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:501 → 521
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam02023
      Location:49 → 136
      SCAN; SCAN domain
      pfam13465
      Location:541 → 566
      zf-H2C2_2; Zinc-finger double domain
      cl00125
      Location:103 → 192
      RHOD; Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins ...

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037350.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      30335249..30358674
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024983757.2 → XP_024839525.1  zinc finger and SCAN domain-containing protein 12 isoform X2

      Conserved Domains (3) summary
      smart00431
      Location:39 → 149
      SCAN; leucine rich region
      COG5048
      Location:265 → 599
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:492 → 512
      ZF_C2H2; C2H2 Zn finger [structural motif]

    2. XM_059880450.1 → XP_059736433.1  zinc finger and SCAN domain-containing protein 12 isoform X1

      UniProtKB/TrEMBL
      A0AAA9TYP1

    3. XM_059880454.1 → XP_059736437.1  zinc finger and SCAN domain-containing protein 12 isoform X1

      UniProtKB/TrEMBL
      A0AAA9TYP1

    4. XM_059880451.1 → XP_059736434.1  zinc finger and SCAN domain-containing protein 12 isoform X1

      UniProtKB/TrEMBL
      A0AAA9TYP1

    5. XM_059880453.1 → XP_059736436.1  zinc finger and SCAN domain-containing protein 12 isoform X1

      UniProtKB/TrEMBL
      A0AAA9TYP1

    6. XM_059880452.1 → XP_059736435.1  zinc finger and SCAN domain-containing protein 12 isoform X1

      UniProtKB/TrEMBL
      A0AAA9TYP1
      Related
      ENSBTAP00000102355.1, ENSBTAT00000105526.1

    7. XM_059880455.1 → XP_059736438.1  zinc finger and SCAN domain-containing protein 12 isoform X1

      UniProtKB/TrEMBL
      A0AAA9TYP1

    8. XM_059880456.1 → XP_059736439.1  zinc finger and SCAN domain-containing protein 12 isoform X1

      UniProtKB/TrEMBL
      A0AAA9TYP1

    9. XM_059880457.1 → XP_059736440.1  zinc finger and SCAN domain-containing protein 12 isoform X3

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials