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    IGSF10 immunoglobulin superfamily member 10 [ Bos taurus (domestic cattle) ]

    Gene ID: 537487, updated on 30-Jan-2025

    Summary

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    Official Symbol
    IGSF10provided by VGNC
    Official Full Name
    immunoglobulin superfamily member 10provided by VGNC
    Primary source
    VGNC:VGNC:53582
    See related
    BGD:BT14609; EnsemblRapid:ENSBTAG00070001724
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See IGSF10 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 1 NC_037328.1 (116619617..116652023)

    Chromosome 1 - NC_037328.1Genomic Context describing neighboring genes Neighboring gene C1GALT1-specific chaperone 1 Neighboring gene ferritin light chain-like Neighboring gene mediator complex subunit 12L Neighboring gene purinergic receptor P2Y12 Neighboring gene purinergic receptor P2Y13 Neighboring gene G protein-coupled receptor 87

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037328.1 Chromosome 1 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    immunoglobulin superfamily member 10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001206785.1 → NP_001193714.1  immunoglobulin superfamily member 10 precursor

      Status: VALIDATED

      Source sequence(s)
      AAFC03011381, AAFC03011382, AAFC03011386, EE358837
      Conserved Domains (12) summary
      cd00096
      Location:2535 → 2608
      Ig; Immunoglobulin domain
      smart00408
      Location:1847 → 1913
      IGc2; Immunoglobulin C-2 Type
      smart00013
      Location:28 → 60
      LRRNT; Leucine rich repeat N-terminal domain
      smart00082
      Location:219 → 254
      LRRCT; Leucine rich repeat C-terminal domain
      smart00409
      Location:2139 → 2219
      IG; Immunoglobulin
      smart00410
      Location:1743 → 1827
      IG_like; Immunoglobulin like
      pfam07679
      Location:1832 → 1923
      I-set; Immunoglobulin I-set domain
      sd00033
      Location:60 → 82
      LRR_RI; leucine-rich repeat [structural motif]
      pfam05109
      Location:861 → 1496
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
      pfam12799
      Location:130 → 170
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:107 → 165
      LRR_8; Leucine rich repeat
      cl11960
      Location:1658 → 1730
      Ig; Immunoglobulin domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037328.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      116619617..116652023
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024990687.2 → XP_024846455.1  immunoglobulin superfamily member 10 isoform X1

      UniProtKB/TrEMBL
      E1BAU3
      Conserved Domains (10) summary
      TIGR00864
      Location:192 → 354
      PCC; polycystin cation channel protein
      smart00013
      Location:28 → 60
      LRRNT; Leucine rich repeat N-terminal domain
      smart00409
      Location:486 → 568
      IG; Immunoglobulin
      smart00410
      Location:2139 → 2219
      IG_like; Immunoglobulin like
      sd00033
      Location:60 → 82
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:107 → 165
      LRR_8; Leucine rich repeat
      pfam13927
      Location:2420 → 2499
      Ig_3; Immunoglobulin domain
      cd00096
      Location:1656 → 1727
      Ig; Immunoglobulin domain
      cl11960
      Location:588 → 662
      Ig; Immunoglobulin domain
      cl25496
      Location:861 → 1496
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)

    2. XM_010801524.4 → XP_010799826.2  immunoglobulin superfamily member 10 isoform X1

      UniProtKB/TrEMBL
      E1BAU3
      Related
      ENSBTAP00070002230.1, ENSBTAT00070004002.1
      Conserved Domains (10) summary
      TIGR00864
      Location:192 → 354
      PCC; polycystin cation channel protein
      smart00013
      Location:28 → 60
      LRRNT; Leucine rich repeat N-terminal domain
      smart00409
      Location:486 → 568
      IG; Immunoglobulin
      smart00410
      Location:2139 → 2219
      IG_like; Immunoglobulin like
      sd00033
      Location:60 → 82
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:107 → 165
      LRR_8; Leucine rich repeat
      pfam13927
      Location:2420 → 2499
      Ig_3; Immunoglobulin domain
      cd00096
      Location:1656 → 1727
      Ig; Immunoglobulin domain
      cl11960
      Location:588 → 662
      Ig; Immunoglobulin domain
      cl25496
      Location:861 → 1496
      Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
    Nucleotide Protein Strain
    Heading Accession and Version

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