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    SAP30L SAP30 like [ Bos taurus (domestic cattle) ]

    Gene ID: 533462, updated on 27-Dec-2024

    Summary

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    Official Symbol
    SAP30Lprovided by VGNC
    Official Full Name
    SAP30 likeprovided by VGNC
    Primary source
    VGNC:VGNC:34284
    See related
    BGD:BT28131; Ensembl:ENSBTAG00000004000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Annotation information
    Annotation category: suggests misassembly
    Orthologs
    human mouse all
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    Genomic context

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    See SAP30L in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 7 NC_037334.1 (65722021..65735762)

    Chromosome 7 - NC_037334.1Genomic Context describing neighboring genes Neighboring gene small integral membrane protein 15 Neighboring gene polypeptide N-acetylgalactosaminyltransferase 10 Neighboring gene uncharacterized LOC132345778 Neighboring gene heart and neural crest derivatives expressed 1 Neighboring gene ferritin light chain-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037334.1 Chromosome 7 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of histone deacetylase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    histone deacetylase complex subunit SAP30L

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001191372.3 → NP_001178301.1  histone deacetylase complex subunit SAP30L

      See identical proteins and their annotated locations for NP_001178301.1

      Status: VALIDATED

      Source sequence(s)
      NKLS02000007
      UniProtKB/TrEMBL
      F1MFL5
      Related
      ENSBTAP00000005222.5, ENSBTAT00000005222.7
      Conserved Domains (2) summary
      pfam13866
      Location:23 → 94
      zf-SAP30; SAP30 zinc-finger
      pfam13867
      Location:113 → 165
      SAP30_Sin3_bdg; Sin3 binding region of histone deacetylase complex subunit SAP30

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037334.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      65722021..65735762
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059888254.1 → XP_059744237.1  histone deacetylase complex subunit SAP30L isoform X1

      UniProtKB/TrEMBL
      F1MFL5

    2. XM_059888255.1 → XP_059744238.1  histone deacetylase complex subunit SAP30L isoform X1

      UniProtKB/TrEMBL
      F1MFL5

    3. XM_059888256.1 → XP_059744239.1  histone deacetylase complex subunit SAP30L isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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