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    FHIP1B FHF complex subunit HOOK interacting protein 1B [ Bos taurus (domestic cattle) ]

    Gene ID: 508334, updated on 27-Dec-2024

    Summary

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    Official Symbol
    FHIP1Bprovided by VGNC
    Official Full Name
    FHF complex subunit HOOK interacting protein 1Bprovided by VGNC
    Primary source
    VGNC:VGNC:97271
    See related
    Ensembl:ENSBTAG00000020515
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    FHIP; FAM160A2
    Orthologs
    human mouse all
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    Genomic context

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    See FHIP1B in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 15 NC_037342.1 (46801512..46827699)

    Chromosome 15 - NC_037342.1Genomic Context describing neighboring genes Neighboring gene cholecystokinin B receptor Neighboring gene cyclic nucleotide gated channel subunit alpha 4 Neighboring gene chromosome 15 C11orf42 homolog Neighboring gene olfactory receptor family 52 subfamily W member 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037342.1 Chromosome 15 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC166197

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in early endosome to late endosome transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endosome organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endosome to lysosome transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lysosome organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of FHF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    FHF complex subunit HOOK-interacting protein 1B
    Names
    FTS and Hook-interacting protein
    family with sequence similarity 160 member A2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001102491.1 → NP_001095961.1  FHF complex subunit HOOK-interacting protein 1B

      See identical proteins and their annotated locations for NP_001095961.1

      Status: PROVISIONAL

      Source sequence(s)
      BC151392
      UniProtKB/Swiss-Prot
      A7YY62
      UniProtKB/TrEMBL
      A0A3Q1M744
      Conserved Domains (1) summary
      pfam10257
      Location:97 → 426
      RAI16-like; Retinoic acid induced 16-like protein

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037342.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      46801512..46827699
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024975116.2 → XP_024830884.1  FHF complex subunit HOOK-interacting protein 1B isoform X1

      UniProtKB/TrEMBL
      A0A3Q1M744, A0AAF6Z8E2
      Conserved Domains (1) summary
      pfam10257
      Location:97 → 426
      RAI16-like; Retinoic acid induced 16-like protein

    2. XM_024975113.2 → XP_024830881.1  FHF complex subunit HOOK-interacting protein 1B isoform X1

      UniProtKB/TrEMBL
      A0A3Q1M744, A0AAF6Z8E2
      Conserved Domains (1) summary
      pfam10257
      Location:97 → 426
      RAI16-like; Retinoic acid induced 16-like protein

    3. XM_024975117.2 → XP_024830885.1  FHF complex subunit HOOK-interacting protein 1B isoform X2

      UniProtKB/Swiss-Prot
      A7YY62
      UniProtKB/TrEMBL
      A0A3Q1M744
      Conserved Domains (1) summary
      pfam10257
      Location:97 → 426
      RAI16-like; Retinoic acid induced 16-like protein

    4. XM_024975115.2 → XP_024830883.1  FHF complex subunit HOOK-interacting protein 1B isoform X1

      UniProtKB/TrEMBL
      A0A3Q1M744, A0AAF6Z8E2
      Related
      ENSBTAP00000027334.7, ENSBTAT00000027334.7
      Conserved Domains (1) summary
      pfam10257
      Location:97 → 426
      RAI16-like; Retinoic acid induced 16-like protein

    5. XM_024975118.2 → XP_024830886.1  FHF complex subunit HOOK-interacting protein 1B isoform X3

      Conserved Domains (1) summary
      pfam10257
      Location:97 → 426
      RAI16-like; Retinoic acid induced 16-like protein
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A7YY62.1 GenPept UniProtKB/Swiss-Prot:A7YY62

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