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    IFRD2 interferon related developmental regulator 2 [ Bos taurus (domestic cattle) ]

    Gene ID: 767939, updated on 27-Dec-2024

    Summary

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    Official Symbol
    IFRD2provided by VGNC
    Official Full Name
    interferon related developmental regulator 2provided by VGNC
    Primary source
    VGNC:VGNC:30063
    See related
    BGD:BT21450; Ensembl:ENSBTAG00000000480
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See IFRD2 in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 22 NC_037349.1 (50039823..50066774)

    Chromosome 22 - NC_037349.1Genomic Context describing neighboring genes Neighboring gene hyaluronidase 1 Neighboring gene N-alpha-acetyltransferase 80, NatH catalytic subunit Neighboring gene hyaluronidase 3 Neighboring gene leucine rich single-pass membrane protein 2 Neighboring gene semaphorin 3B Neighboring gene G protein subunit alpha i2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037349.1 Chromosome 22 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC129055

    General protein information

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    Preferred Names
    interferon-related developmental regulator 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001077012.1 → NP_001070480.1  interferon-related developmental regulator 2

      See identical proteins and their annotated locations for NP_001070480.1

      Status: PROVISIONAL

      Source sequence(s)
      BC104631
      UniProtKB/TrEMBL
      F6PXQ7, Q3SWW7
      Related
      ENSBTAP00000000607.5, ENSBTAT00000000607.6
      Conserved Domains (2) summary
      pfam04836
      Location:384 → 437
      IFRD_C; Interferon-related protein conserved region
      pfam05004
      Location:32 → 338
      IFRD; Interferon-related developmental regulator (IFRD)

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037349.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      50039823..50066774
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059879912.1 → XP_059735895.1  interferon-related developmental regulator 2 isoform X1

      UniProtKB/TrEMBL
      F6PXQ7

    2. XM_059879913.1 → XP_059735896.1  interferon-related developmental regulator 2 isoform X2

      UniProtKB/TrEMBL
      F6PXQ7

    3. XM_024983079.2 → XP_024838847.1  interferon-related developmental regulator 2 isoform X3

      UniProtKB/TrEMBL
      F6PXQ7
      Conserved Domains (2) summary
      pfam04836
      Location:385 → 437
      IFRD_C; Interferon-related protein conserved region
      pfam05004
      Location:32 → 339
      IFRD; Interferon-related developmental regulator (IFRD)

    4. XM_059879914.1 → XP_059735897.1  interferon-related developmental regulator 2 isoform X4

    5. XM_059879915.1 → XP_059735898.1  interferon-related developmental regulator 2 isoform X5

    6. XM_024983080.2 → XP_024838848.1  interferon-related developmental regulator 2 isoform X6

      Conserved Domains (3) summary
      pfam04836
      Location:362 → 414
      IFRD_C; Interferon-related protein conserved region
      pfam05004
      Location:224 → 316
      IFRD; Interferon-related developmental regulator (IFRD)
      cl26464
      Location:74 → 251
      Atrophin-1; Atrophin-1 family

    7. XM_005222936.4 → XP_005222993.1  interferon-related developmental regulator 2 isoform X7

      Conserved Domains (3) summary
      pfam04836
      Location:361 → 414
      IFRD_C; Interferon-related protein conserved region
      pfam05004
      Location:223 → 315
      IFRD; Interferon-related developmental regulator (IFRD)
      pfam12016
      Location:29 → 116
      Stonin2_N; Stonin 2

    8. XM_059879916.1 → XP_059735899.1  interferon-related developmental regulator 2 isoform X8

    9. XM_059879917.1 → XP_059735900.1  interferon-related developmental regulator 2 isoform X9

    Nucleotide Protein Strain
    Heading Accession and Version

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