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    ATP13A3 ATPase 13A3 [ Bos taurus (domestic cattle) ]

    Gene ID: 523889, updated on 1-Jan-2025

    Summary

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    Official Symbol
    ATP13A3provided by VGNC
    Official Full Name
    ATPase 13A3provided by VGNC
    Primary source
    VGNC:VGNC:26279
    See related
    BGD:BT11451; Ensembl:ENSBTAG00000013204
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See ATP13A3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    35
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 1 NC_037328.1 (73048146..73127596)

    Chromosome 1 - NC_037328.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 44 Neighboring gene microRNA mir-2287 Neighboring gene uncharacterized LOC104970894 Neighboring gene glycoprotein V platelet Neighboring gene leucine rich repeat containing 15

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037328.1 Chromosome 1 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATPase-coupled monoatomic cation transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables P-type ion transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables polyamine transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular calcium ion homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in polyamine transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in late endosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polyamine-transporting ATPase 13A3
    NP_001179514.1
    XP_005201547.1
    XP_005201549.1
    XP_024845414.1
    XP_024845418.1
    XP_059740736.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001192585.1 → NP_001179514.1  polyamine-transporting ATPase 13A3

      See identical proteins and their annotated locations for NP_001179514.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000001
      UniProtKB/TrEMBL
      A0A3Q1M5T0
      Related
      ENSBTAP00000065678.2, ENSBTAT00000079971.2
      Conserved Domains (1) summary
      TIGR01657
      Location:14 → 1149
      P-ATPase-V; P-type ATPase of unknown pump specificity (type V)

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037328.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      73048146..73127596
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059884753.1 → XP_059740736.1  polyamine-transporting ATPase 13A3 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1LMJ5, A0A3Q1M5T0, E1BG26

    2. XM_005201490.5 → XP_005201547.1  polyamine-transporting ATPase 13A3 isoform X1

      See identical proteins and their annotated locations for XP_005201547.1

      UniProtKB/TrEMBL
      A0A3Q1LMJ5, A0A3Q1M5T0, E1BG26
      Related
      ENSBTAP00000017579.5, ENSBTAT00000017579.6
      Conserved Domains (1) summary
      TIGR01657
      Location:14 → 1149
      P-ATPase-V; P-type ATPase of unknown pump specificity (type V)

    3. XM_024989650.2 → XP_024845418.1  polyamine-transporting ATPase 13A3 isoform X3

      UniProtKB/TrEMBL
      A0A3Q1M5T0
      Conserved Domains (1) summary
      TIGR01657
      Location:14 → 1149
      P-ATPase-V; P-type ATPase of unknown pump specificity (type V)

    4. XM_024989646.2 → XP_024845414.1  polyamine-transporting ATPase 13A3 isoform X2

      UniProtKB/TrEMBL
      A0A3Q1M5T0, A0A3Q1NDX5
      Related
      ENSBTAP00000069740.2, ENSBTAT00000077077.2
      Conserved Domains (1) summary
      TIGR01657
      Location:14 → 1122
      P-ATPase-V; P-type ATPase of unknown pump specificity (type V)

    5. XM_005201492.5 → XP_005201549.1  polyamine-transporting ATPase 13A3 isoform X1

      See identical proteins and their annotated locations for XP_005201549.1

      UniProtKB/TrEMBL
      A0A3Q1LMJ5, A0A3Q1M5T0, E1BG26
      Conserved Domains (1) summary
      TIGR01657
      Location:14 → 1149
      P-ATPase-V; P-type ATPase of unknown pump specificity (type V)
    Nucleotide Protein Strain
    Heading Accession and Version

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