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    TRA2B transformer 2 beta homolog [ Bos taurus (domestic cattle) ]

    Gene ID: 615156, updated on 30-Jan-2025

    Summary

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    Official Symbol
    TRA2Bprovided by VGNC
    Official Full Name
    transformer 2 beta homologprovided by VGNC
    Primary source
    VGNC:VGNC:36268
    See related
    BGD:BT14145; EnsemblRapid:ENSBTAG00070028619
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    SFRS10
    Orthologs
    human mouse all
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    Genomic context

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    See TRA2B in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 1 NC_037328.1 (81288263..81307982)

    Chromosome 1 - NC_037328.1Genomic Context describing neighboring genes Neighboring gene ETS variant transcription factor 5 Neighboring gene nmrA-like family domain-containing protein 1 Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene insulin like growth factor 2 mRNA binding protein 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037328.1 Chromosome 1 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Clone Names

    • MGC128162

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transformer-2 protein homolog beta
    Names
    TRA-2 beta
    TRA2-beta
    splicing factor, arginine/serine-rich 10 (transformer 2 homolog, Drosophila)
    transformer-2 protein homolog B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034776.2 → NP_001029948.1  transformer-2 protein homolog beta

      See identical proteins and their annotated locations for NP_001029948.1

      Status: PROVISIONAL

      Source sequence(s)
      BC103113
      UniProtKB/Swiss-Prot
      Q3ZBT6
      Related
      ENSBTAP00070039243.1, ENSBTAT00070065105.1
      Conserved Domains (1) summary
      cd12363
      Location:117 → 196
      RRM_TRA2; RNA recognition motif (RRM) found in transformer-2 protein homolog TRA2-alpha, TRA2-beta and similar proteins

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037328.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      81288263..81307982
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010801245.4 → XP_010799547.1  transformer-2 protein homolog beta isoform X1

      See identical proteins and their annotated locations for XP_010799547.1

      Conserved Domains (1) summary
      cd12641
      Location:11 → 97
      RRM_TRA2B; RNA recognition motif (RRM) found in Transformer-2 protein homolog beta (TRA-2 beta) and similar proteins

    2. XM_059886545.1 → XP_059742528.1  transformer-2 protein homolog beta isoform X1

      Related
      ENSBTAP00070039199.1, ENSBTAT00070065054.1
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3ZBT6.1 GenPept UniProtKB/Swiss-Prot:Q3ZBT6

    Gene LinkOut

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