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    PPDPF pancreatic progenitor cell differentiation and proliferation factor [ Bos taurus (domestic cattle) ]

    Gene ID: 506990, updated on 31-Dec-2024

    Summary

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    Gene symbol
    PPDPF
    Gene description
    pancreatic progenitor cell differentiation and proliferation factor
    See related
    Ensembl:ENSBTAG00000031800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    C20orf149; C13H20orf149
    Orthologs
    human mouse all
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    Genomic context

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    See PPDPF in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 13 NC_037340.1 (54136186..54137833, complement)

    Chromosome 13 - NC_037340.1Genomic Context describing neighboring genes Neighboring gene fibronectin type III domain containing 11 Neighboring gene src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites Neighboring gene protein tyrosine kinase 6 Neighboring gene uncharacterized LOC132346927 Neighboring gene eukaryotic translation elongation factor 1 alpha 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037340.1 Chromosome 13 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pancreatic progenitor cell differentiation and proliferation factor
    Names
    exocrine differentiation and proliferation factor
    pancreatic progenitor cell differentiation and proliferation factor homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001075294.2 → NP_001068762.2  pancreatic progenitor cell differentiation and proliferation factor

      Status: VALIDATED

      Source sequence(s)
      NKLS02000013

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037340.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      54136186..54137833 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010811414.4 → XP_010809716.1  pancreatic progenitor cell differentiation and proliferation factor isoform X1

      See identical proteins and their annotated locations for XP_010809716.1

      UniProtKB/TrEMBL
      F1MVB9
      Conserved Domains (1) summary
      pfam15060
      Location:1 → 110
      PPDFL; Differentiation and proliferation regulator

    2. XM_025000413.2 → XP_024856181.1  pancreatic progenitor cell differentiation and proliferation factor isoform X2

      Conserved Domains (1) summary
      pfam15060
      Location:1 → 45
      PPDFL; Differentiation and proliferation regulator
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3ZCB6.1 GenPept UniProtKB/Swiss-Prot:Q3ZCB6

    Gene LinkOut

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