U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    TPD52L2 TPD52 like 2 [ Bos taurus (domestic cattle) ]

    Gene ID: 534704, updated on 27-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    TPD52L2provided by VGNC
    Official Full Name
    TPD52 like 2provided by VGNC
    Primary source
    VGNC:VGNC:36246
    See related
    BGD:BT21962; Ensembl:ENSBTAG00000021232
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See TPD52L2 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 13 NC_037340.1 (53939535..53955461, complement)

    Chromosome 13 - NC_037340.1Genomic Context describing neighboring genes Neighboring gene microRNA mir-1388 Neighboring gene DnaJ heat shock protein family (Hsp40) member C5 Neighboring gene abhydrolase domain containing 16B Neighboring gene zinc finger and BTB domain containing 46

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037340.1 Chromosome 13 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Clone Names

    • MGC127604

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    tumor protein D54
    Names
    tumor protein D52 like 2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034615.2 → NP_001029787.1  tumor protein D54

      See identical proteins and their annotated locations for NP_001029787.1

      Status: PROVISIONAL

      Source sequence(s)
      BC103373
      UniProtKB/TrEMBL
      G3MWH1, Q3SYU8
      Related
      ENSBTAP00000028291.4, ENSBTAT00000028291.5
      Conserved Domains (1) summary
      pfam04201
      Location:20 → 177
      TPD52; tumor protein D52 family

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037340.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      53939535..53955461 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005214783.5 → XP_005214840.1  tumor protein D54 isoform X2

      See identical proteins and their annotated locations for XP_005214840.1

      UniProtKB/TrEMBL
      G3MWH1
      Conserved Domains (1) summary
      pfam04201
      Location:20 → 200
      TPD52; tumor protein D52 family

    2. XM_005214786.5 → XP_005214843.1  tumor protein D54 isoform X4

      See identical proteins and their annotated locations for XP_005214843.1

      UniProtKB/TrEMBL
      G3MWH1
      Conserved Domains (1) summary
      pfam04201
      Location:20 → 197
      TPD52; tumor protein D52 family

    3. XM_005214781.4 → XP_005214838.1  tumor protein D54 isoform X1

      See identical proteins and their annotated locations for XP_005214838.1

      Conserved Domains (1) summary
      pfam04201
      Location:20 → 220
      TPD52; tumor protein D52 family

    4. XM_059892690.1 → XP_059748673.1  tumor protein D54 isoform X3

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.