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    NFYC nuclear transcription factor Y subunit gamma [ Bos taurus (domestic cattle) ]

    Gene ID: 534003, updated on 30-Jan-2025

    Summary

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    Official Symbol
    NFYCprovided by VGNC
    Official Full Name
    nuclear transcription factor Y subunit gammaprovided by VGNC
    Primary source
    VGNC:VGNC:32057
    See related
    BGD:BT18808; EnsemblRapid:ENSBTAG00070002360
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See NFYC in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 3 NC_037330.1 (105445059..105510073, complement)

    Chromosome 3 - NC_037330.1Genomic Context describing neighboring genes Neighboring gene Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4 Neighboring gene uncharacterized LOC132344933 Neighboring gene potassium voltage-gated channel subfamily Q member 4 Neighboring gene microRNA mir-30c Neighboring gene microRNA mir-30e Neighboring gene regulating synaptic membrane exocytosis 3 Neighboring gene uncharacterized LOC112446033 Neighboring gene uncharacterized LOC511494

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037330.1 Chromosome 3 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC128196

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CCAAT-binding factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    nuclear transcription factor Y subunit gamma
    Names
    CAAT box DNA-binding protein subunit C
    NF-YC
    nuclear transcription factor Y subunit C
    nuclear transcription factor Y, gamma

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034598.1 → NP_001029770.1  nuclear transcription factor Y subunit gamma

      See identical proteins and their annotated locations for NP_001029770.1

      Status: PROVISIONAL

      Source sequence(s)
      BT020742
      UniProtKB/TrEMBL
      Q2KJE2
      Related
      ENSBTAP00070003121.1, ENSBTAT00070005460.1
      Conserved Domains (1) summary
      cl28542
      Location:17 → 123
      BUR6; Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription]

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037330.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      105445059..105510073 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059884699.1 → XP_059740682.1  nuclear transcription factor Y subunit gamma isoform X3

      UniProtKB/TrEMBL
      Q2KJE2

    2. XM_024989448.2 → XP_024845216.1  nuclear transcription factor Y subunit gamma isoform X1

      UniProtKB/Swiss-Prot
      Q5E9X1, Q5EA27
      UniProtKB/TrEMBL
      Q2KJE2
      Conserved Domains (1) summary
      cl28542
      Location:17 → 123
      BUR6; Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription]

    3. XM_024989449.2 → XP_024845217.1  nuclear transcription factor Y subunit gamma isoform X1

      UniProtKB/Swiss-Prot
      Q5E9X1, Q5EA27
      UniProtKB/TrEMBL
      Q2KJE2
      Conserved Domains (1) summary
      cl28542
      Location:17 → 123
      BUR6; Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription]

    4. XM_024989451.2 → XP_024845219.1  nuclear transcription factor Y subunit gamma isoform X1

      UniProtKB/Swiss-Prot
      Q5E9X1, Q5EA27
      UniProtKB/TrEMBL
      Q2KJE2
      Conserved Domains (1) summary
      cl28542
      Location:17 → 123
      BUR6; Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription]

    5. XM_059884696.1 → XP_059740679.1  nuclear transcription factor Y subunit gamma isoform X1

      UniProtKB/Swiss-Prot
      Q5E9X1, Q5EA27
      UniProtKB/TrEMBL
      Q2KJE2

    6. XM_024989450.2 → XP_024845218.1  nuclear transcription factor Y subunit gamma isoform X1

      UniProtKB/Swiss-Prot
      Q5E9X1, Q5EA27
      UniProtKB/TrEMBL
      Q2KJE2
      Conserved Domains (1) summary
      cl28542
      Location:17 → 123
      BUR6; Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription]

    7. XM_010803663.2 → XP_010801965.1  nuclear transcription factor Y subunit gamma isoform X1

      See identical proteins and their annotated locations for XP_010801965.1

      UniProtKB/Swiss-Prot
      Q5E9X1, Q5EA27
      UniProtKB/TrEMBL
      Q2KJE2
      Conserved Domains (1) summary
      cl28542
      Location:17 → 123
      BUR6; Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription]

    8. XM_005204778.4 → XP_005204835.1  nuclear transcription factor Y subunit gamma isoform X1

      See identical proteins and their annotated locations for XP_005204835.1

      UniProtKB/Swiss-Prot
      Q5E9X1, Q5EA27
      UniProtKB/TrEMBL
      Q2KJE2
      Conserved Domains (1) summary
      cl28542
      Location:17 → 123
      BUR6; Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription]

    9. XM_010803660.4 → XP_010801962.1  nuclear transcription factor Y subunit gamma isoform X1

      See identical proteins and their annotated locations for XP_010801962.1

      UniProtKB/Swiss-Prot
      Q5E9X1, Q5EA27
      UniProtKB/TrEMBL
      Q2KJE2
      Conserved Domains (1) summary
      cl28542
      Location:17 → 123
      BUR6; Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription]

    10. XM_059884697.1 → XP_059740680.1  nuclear transcription factor Y subunit gamma isoform X1

      UniProtKB/Swiss-Prot
      Q5E9X1, Q5EA27
      UniProtKB/TrEMBL
      Q2KJE2

    11. XM_059884698.1 → XP_059740681.1  nuclear transcription factor Y subunit gamma isoform X2

      UniProtKB/TrEMBL
      A0A140T8B0, Q2KJE2
      Related
      ENSBTAP00070003144.1, ENSBTAT00070005497.1
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5E9X1.1 GenPept UniProtKB/Swiss-Prot:Q5E9X1

    Gene LinkOut

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