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    ETV1 ETS variant transcription factor 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 540846, updated on 27-Dec-2024

    Summary

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    Official Symbol
    ETV1provided by VGNC
    Official Full Name
    ETS variant transcription factor 1provided by VGNC
    Primary source
    VGNC:VGNC:28628
    See related
    Ensembl:ENSBTAG00000015981
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See ETV1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 4 NC_037331.1 (22097662..22196624, complement)

    Chromosome 4 - NC_037331.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112446324 Neighboring gene small nucleolar RNA SNORA3/SNORA45 family Neighboring gene uncharacterized LOC132345069 Neighboring gene diacylglycerol kinase beta Neighboring gene transfer RNA cysteine (anticodon GCA)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037331.1 Chromosome 4 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Clone Names

    • MGC137631

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ETS translocation variant 1
    Names
    ets variant gene 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001046492.2 → NP_001039957.1  ETS translocation variant 1

      See identical proteins and their annotated locations for NP_001039957.1

      Status: PROVISIONAL

      Source sequence(s)
      BC112692
      UniProtKB/Swiss-Prot
      Q2KIC2
      UniProtKB/TrEMBL
      A0AAF6Z220
      Related
      ENSBTAP00000066888.2, ENSBTAT00000085090.2
      Conserved Domains (2) summary
      smart00413
      Location:334 → 418
      ETS; erythroblast transformation specific domain
      pfam04621
      Location:2 → 333
      ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037331.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      22097662..22196624 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059885715.1 → XP_059741698.1  ETS translocation variant 1 isoform X1

      UniProtKB/TrEMBL
      A0AAF6Z220

    2. XM_059885714.1 → XP_059741697.1  ETS translocation variant 1 isoform X1

      UniProtKB/TrEMBL
      A0AAF6Z220

    3. XM_059885713.1 → XP_059741696.1  ETS translocation variant 1 isoform X1

      UniProtKB/TrEMBL
      A0AAF6Z220

    4. XM_005205203.5 → XP_005205260.1  ETS translocation variant 1 isoform X2

      See identical proteins and their annotated locations for XP_005205260.1

      UniProtKB/Swiss-Prot
      Q2KIC2
      UniProtKB/TrEMBL
      A0AAF6Z220
      Conserved Domains (2) summary
      smart00413
      Location:334 → 418
      ETS; erythroblast transformation specific domain
      pfam04621
      Location:2 → 333
      ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain

    5. XM_010804048.4 → XP_010802350.1  ETS translocation variant 1 isoform X1

      See identical proteins and their annotated locations for XP_010802350.1

      UniProtKB/TrEMBL
      A0AAF6Z220
      Conserved Domains (2) summary
      smart00413
      Location:369 → 453
      ETS; erythroblast transformation specific domain
      pfam04621
      Location:2 → 368
      ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain

    6. XM_010804047.4 → XP_010802349.1  ETS translocation variant 1 isoform X1

      See identical proteins and their annotated locations for XP_010802349.1

      UniProtKB/TrEMBL
      A0AAF6Z220
      Conserved Domains (2) summary
      smart00413
      Location:369 → 453
      ETS; erythroblast transformation specific domain
      pfam04621
      Location:2 → 368
      ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain

    7. XM_010804051.4 → XP_010802353.1  ETS translocation variant 1 isoform X3

      UniProtKB/TrEMBL
      A0AAF6Z220
      Conserved Domains (2) summary
      smart00413
      Location:329 → 413
      ETS; erythroblast transformation specific domain
      pfam04621
      Location:21 → 328
      ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain

    8. XM_005205208.5 → XP_005205265.1  ETS translocation variant 1 isoform X4

      See identical proteins and their annotated locations for XP_005205265.1

      UniProtKB/TrEMBL
      A0AAF6Z220
      Conserved Domains (2) summary
      smart00413
      Location:294 → 378
      ETS; erythroblast transformation specific domain
      pfam04621
      Location:21 → 293
      ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain

    9. XM_024990850.2 → XP_024846618.1  ETS translocation variant 1 isoform X5

      Conserved Domains (2) summary
      smart00413
      Location:102 → 186
      ETS; erythroblast transformation specific domain
      pfam04621
      Location:36 → 101
      ETS_PEA3_N; PEA3 subfamily ETS-domain transcription factor N terminal domain
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2KIC2.1 GenPept UniProtKB/Swiss-Prot:Q2KIC2

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