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    SNRNP40 small nuclear ribonucleoprotein U5 subunit 40 [ Bos taurus (domestic cattle) ]

    Gene ID: 534645, updated on 27-Dec-2024

    Summary

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    Official Symbol
    SNRNP40provided by VGNC
    Official Full Name
    small nuclear ribonucleoprotein U5 subunit 40provided by VGNC
    Primary source
    VGNC:VGNC:35071
    See related
    BGD:BT18447; Ensembl:ENSBTAG00000016817
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    WDR57
    Orthologs
    human mouse all
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    Genomic context

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    See SNRNP40 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 2 NC_037329.1 (122347180..122372984)

    Chromosome 2 - NC_037329.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112443306 Neighboring gene fatty acid binding protein 3 Neighboring gene zinc finger CCHC-type containing 17 Neighboring gene sodium/potassium transporting ATPase interacting 1 Neighboring gene uncharacterized LOC101902958

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037329.1 Chromosome 2 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Clone Names

    • MGC128126

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U5 small nuclear ribonucleoprotein 40 kDa protein
    Names
    U5 snRNP 40 kDa protein
    WD repeat domain 57 (U5 snRNP specific)
    WD repeat-containing protein 57
    small nuclear ribonucleoprotein 40kDa (U5)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001046382.2 → NP_001039847.1  U5 small nuclear ribonucleoprotein 40 kDa protein

      See identical proteins and their annotated locations for NP_001039847.1

      Status: PROVISIONAL

      Source sequence(s)
      BC105383
      UniProtKB/Swiss-Prot
      Q2HJH6
      Related
      ENSBTAP00000022372.5, ENSBTAT00000022372.6
      Conserved Domains (3) summary
      COG2319
      Location:61 → 352
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:63 → 352
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:71 → 108
      7WD40; WD40 repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037329.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      122347180..122372984
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2HJH6.1 GenPept UniProtKB/Swiss-Prot:Q2HJH6

    Gene LinkOut

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