U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CFAP410 cilia and flagella associated protein 410 [ Bos taurus (domestic cattle) ]

    Gene ID: 518967, updated on 27-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CFAP410provided by VGNC
    Official Full Name
    cilia and flagella associated protein 410provided by VGNC
    Primary source
    VGNC:VGNC:53514
    See related
    Ensembl:ENSBTAG00000019589
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    C1H21orf2
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CFAP410 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 1 NC_037328.1 (144340637..144352222, complement)

    Chromosome 1 - NC_037328.1Genomic Context describing neighboring genes Neighboring gene autoimmune regulator Neighboring gene phosphofructokinase, liver type Neighboring gene transient receptor potential cation channel subfamily M member 2 Neighboring gene leucine rich repeat containing 3

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037328.1 Chromosome 1 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Clone Names

    • MGC139666

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    cilia and flagella associated protein 410
    Names
    chromosome 1 C21orf2 homolog

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001075781.1 → NP_001069249.1  cilia and flagella associated protein 410

      See identical proteins and their annotated locations for NP_001069249.1

      Status: PROVISIONAL

      Source sequence(s)
      BC118255
      UniProtKB/TrEMBL
      F6QNB7, Q17QN7
      Related
      ENSBTAP00000026102.5, ENSBTAT00000026102.6
      Conserved Domains (4) summary
      smart00446
      Location:107 → 122
      LRRcap; occurring C-terminal to leucine-rich repeats
      sd00035
      Location:42 → 63
      LRR_NTF; leucine-rich repeat [structural motif]
      pfam12799
      Location:40 → 82
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:40 → 98
      LRR_8; Leucine rich repeat

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037328.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      144340637..144352222 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010801655.4 → XP_010799957.1  cilia and flagella associated protein 410 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1N4A9, F6QNB7
      Related
      ENSBTAP00000064605.2, ENSBTAT00000068815.2
      Conserved Domains (4) summary
      smart00446
      Location:108 → 123
      LRRcap; occurring C-terminal to leucine-rich repeats
      sd00035
      Location:43 → 64
      LRR_NTF; leucine-rich repeat [structural motif]
      pfam12799
      Location:41 → 83
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:41 → 99
      LRR_8; Leucine rich repeat

    2. XM_024989311.2 → XP_024845079.1  cilia and flagella associated protein 410 isoform X2

      UniProtKB/TrEMBL
      F6QNB7
      Conserved Domains (2) summary
      sd00035
      Location:42 → 63
      LRR_NTF; leucine-rich repeat [structural motif]
      pfam14580
      Location:64 → 130
      LRR_9; Leucine-rich repeat
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials