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    PHF1 PHD finger protein 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 508957, updated on 30-Jan-2025

    Summary

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    Official Symbol
    PHF1provided by VGNC
    Official Full Name
    PHD finger protein 1provided by VGNC
    Primary source
    VGNC:VGNC:32812
    See related
    BGD:BT26385; EnsemblRapid:ENSBTAG00070009252
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See PHF1 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 23 NC_037350.1 (7586183..7591947)

    Chromosome 23 - NC_037350.1Genomic Context describing neighboring genes Neighboring gene heat shock factor protein 1-like Neighboring gene kinesin family member C1 Neighboring gene synaptic Ras GTPase activating protein 1 Neighboring gene cutA divalent cation tolerance homolog Neighboring gene uncharacterized LOC112443859

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037350.1 Chromosome 23 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC166079

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables methylated histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PHD finger protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001098914.2 → NP_001092384.2  PHD finger protein 1

      Status: VALIDATED

      Source sequence(s)
      BC146205, DR113800, DT814893, EE335574
      UniProtKB/TrEMBL
      E1BBS1
      Related
      ENSBTAP00070012254.1, ENSBTAT00070020788.1
      Conserved Domains (4) summary
      smart00333
      Location:29 → 80
      TUDOR; Tudor domain
      cd15500
      Location:89 → 139
      PHD1_PHF1; PHD finger 1 found in PHD finger protein1 (PHF1)
      cd15582
      Location:188 → 239
      PHD2_PHF1; PHD finger 2 found in PHD finger protein1 (PHF1)
      pfam14061
      Location:539 → 564
      Mtf2_C; Polycomb-like MTF2 factor 2

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037350.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      7586183..7591947
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005223220.5 → XP_005223277.1  PHD finger protein 1 isoform X1

      See identical proteins and their annotated locations for XP_005223277.1

      UniProtKB/TrEMBL
      E1BBS1
      Conserved Domains (4) summary
      smart00333
      Location:29 → 80
      TUDOR; Tudor domain
      cd15500
      Location:89 → 139
      PHD1_PHF1; PHD finger 1 found in PHD finger protein1 (PHF1)
      cd15582
      Location:188 → 239
      PHD2_PHF1; PHD finger 2 found in PHD finger protein1 (PHF1)
      pfam14061
      Location:575 → 600
      Mtf2_C; Polycomb-like MTF2 factor 2

    2. XM_005223221.5 → XP_005223278.1  PHD finger protein 1 isoform X2

      UniProtKB/TrEMBL
      E1BBS1
      Conserved Domains (4) summary
      smart00333
      Location:29 → 80
      TUDOR; Tudor domain
      cd15500
      Location:89 → 139
      PHD1_PHF1; PHD finger 1 found in PHD finger protein1 (PHF1)
      cd15582
      Location:188 → 239
      PHD2_PHF1; PHD finger 2 found in PHD finger protein1 (PHF1)
      pfam14061
      Location:574 → 599
      Mtf2_C; Polycomb-like MTF2 factor 2

    RNA

    1. XR_009492447.1 RNA Sequence

    2. XR_009492448.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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