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    TRAPPC9 trafficking protein particle complex subunit 9 [ Bos taurus (domestic cattle) ]

    Gene ID: 533451, updated on 30-Jan-2025

    Summary

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    Official Symbol
    TRAPPC9provided by VGNC
    Official Full Name
    trafficking protein particle complex subunit 9provided by VGNC
    Primary source
    VGNC:VGNC:36294
    See related
    BGD:BT27179; EnsemblRapid:ENSBTAG00070010274
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    IBP; NIBP
    Orthologs
    human mouse all
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    Genomic context

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    See TRAPPC9 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 14 NC_037341.1 (3199429..3587738)

    Chromosome 14 - NC_037341.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132342172 Neighboring gene argonaute RISC catalytic component 2 Neighboring gene chromatin accessibility complex subunit 1 Neighboring gene microRNA mir-12027 Neighboring gene uncharacterized LOC132342173 Neighboring gene potassium two pore domain channel subfamily K member 9 Neighboring gene uncharacterized LOC112449598

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037341.1 Chromosome 14 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Bovine viral diarrhea virus non-structural protein 5A interacts with NIK- and IKKbeta-binding protein. Zahoor MA, et al. J Gen Virol, 2010 Aug. PMID 20444997
    2. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    3. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    4. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The minimal residues of NIBP that interact with NS5A of bovine viral diarrhea virus were mapped as aa 597-623.
      Title: Bovine viral diarrhea virus non-structural protein 5A interacts with NIK- and IKKbeta-binding protein.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Clone Names

    • MGC128657

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in trans-Golgi network IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    trafficking protein particle complex subunit 9
    Names
    NIK and IKK(beta) binding protein
    NIK and IKK{beta} binding protein
    NIK- and IKBKB-binding protein
    trafficking protein particle complex 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001037474.3 → NP_001032551.2  trafficking protein particle complex subunit 9

      Status: VALIDATED

      Source sequence(s)
      BC108119, DAAA02037533, DAAA02037536
      UniProtKB/Swiss-Prot
      A1L534, Q32PH0
      Related
      ENSBTAP00070013571.1, ENSBTAT00070023063.1
      Conserved Domains (1) summary
      pfam08626
      Location:14 → 1067
      TRAPPC9-Trs120; Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037341.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      3199429..3587738
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059893290.1 → XP_059749273.1  trafficking protein particle complex subunit 9 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MF31

    2. XM_059893289.1 → XP_059749272.1  trafficking protein particle complex subunit 9 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MF31

    3. XM_059893293.1 → XP_059749276.1  trafficking protein particle complex subunit 9 isoform X3

      UniProtKB/TrEMBL
      A0A3Q1MF31
      Related
      ENSBTAP00070013585.1, ENSBTAT00070023083.1

    4. XM_059893292.1 → XP_059749275.1  trafficking protein particle complex subunit 9 isoform X2

      UniProtKB/Swiss-Prot
      A1L534, Q32PH0

    5. XM_059893294.1 → XP_059749277.1  trafficking protein particle complex subunit 9 isoform X4

      UniProtKB/Swiss-Prot
      A1L534, Q32PH0
      Related
      ENSBTAP00070013597.1, ENSBTAT00070023104.1

    6. XM_025001631.2 → XP_024857399.1  trafficking protein particle complex subunit 9 isoform X6

      UniProtKB/TrEMBL
      A0AAA9ST30
      Related
      ENSBTAP00070013563.1, ENSBTAT00070023047.1
      Conserved Domains (1) summary
      pfam08626
      Location:14 → 939
      TRAPPC9-Trs120; Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit

    7. XM_059893295.1 → XP_059749278.1  trafficking protein particle complex subunit 9 isoform X5

      UniProtKB/TrEMBL
      A0AAA9ST30

    8. XM_059893291.1 → XP_059749274.1  trafficking protein particle complex subunit 9 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MF31

    RNA

    1. XR_003038034.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q32PH0.1 GenPept UniProtKB/Swiss-Prot:Q32PH0

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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    Research Materials