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    SEC23IP SEC23 interacting protein [ Bos taurus (domestic cattle) ]

    Gene ID: 508557, updated on 30-Jan-2025

    Summary

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    Official Symbol
    SEC23IPprovided by VGNC
    Official Full Name
    SEC23 interacting proteinprovided by VGNC
    Primary source
    VGNC:VGNC:34412
    See related
    BGD:BT25976; EnsemblRapid:ENSBTAG00070024225
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
    NEW
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    Genomic context

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    See SEC23IP in Genome Data Viewer
    Location:
    chromosome: 26
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 26 NC_037353.1 (40001663..40041185)

    Chromosome 26 - NC_037353.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112444566 Neighboring gene inositol polyphosphate-5-phosphatase F Neighboring gene minichromosome maintenance complex binding protein Neighboring gene deoxyuridine 5'-triphosphate nucleotidohydrolase, mitochondrial-like Neighboring gene phospholipid phosphatase 4 Neighboring gene WD repeat domain 11

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037353.1 Chromosome 26 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phospholipase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in COPII-coated ER to Golgi transport vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SEC23-interacting protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001192959.1 → NP_001179888.1  SEC23-interacting protein

      See identical proteins and their annotated locations for NP_001179888.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000026
      UniProtKB/TrEMBL
      E1BKW5
      Conserved Domains (3) summary
      cd09584
      Location:642 → 708
      SAM_sec23ip; SAM domain of sec23ip
      smart00454
      Location:652 → 705
      SAM; Sterile alpha motif
      pfam02862
      Location:786 → 992
      DDHD; DDHD domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037353.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      40001663..40041185
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005225774.5 → XP_005225831.1  SEC23-interacting protein isoform X1

      See identical proteins and their annotated locations for XP_005225831.1

      UniProtKB/TrEMBL
      E1BKW5
      Conserved Domains (3) summary
      cd09584
      Location:642 → 710
      SAM_sec23ip; SAM domain of sec23ip
      smart00454
      Location:652 → 705
      SAM; Sterile alpha motif
      pfam02862
      Location:788 → 994
      DDHD; DDHD domain

    2. XM_005225775.5 → XP_005225832.1  SEC23-interacting protein isoform X2

      UniProtKB/TrEMBL
      E1BKW5
      Related
      ENSBTAP00070032675.1, ENSBTAT00070054582.1
      Conserved Domains (3) summary
      cd09584
      Location:642 → 710
      SAM_sec23ip; SAM domain of sec23ip
      smart00454
      Location:652 → 705
      SAM; Sterile alpha motif
      pfam02862
      Location:788 → 993
      DDHD; DDHD domain

    3. XM_010820079.4 → XP_010818381.1  SEC23-interacting protein isoform X1

      See identical proteins and their annotated locations for XP_010818381.1

      UniProtKB/TrEMBL
      E1BKW5
      Conserved Domains (3) summary
      cd09584
      Location:642 → 710
      SAM_sec23ip; SAM domain of sec23ip
      smart00454
      Location:652 → 705
      SAM; Sterile alpha motif
      pfam02862
      Location:788 → 994
      DDHD; DDHD domain

    4. XM_059881813.1 → XP_059737796.1  SEC23-interacting protein isoform X3

      UniProtKB/TrEMBL
      A0AAA9TNE8, E1BKW5
      Related
      ENSBTAP00070032680.1, ENSBTAT00070054593.1
    Nucleotide Protein Strain
    Heading Accession and Version

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