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    SPATS2L spermatogenesis associated serine rich 2 like [ Bos taurus (domestic cattle) ]

    Gene ID: 539299, updated on 30-Jan-2025

    Summary

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    Official Symbol
    SPATS2Lprovided by VGNC
    Official Full Name
    spermatogenesis associated serine rich 2 likeprovided by VGNC
    Primary source
    VGNC:VGNC:35194
    See related
    BGD:BT23141; EnsemblRapid:ENSBTAG00070010664
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See SPATS2L in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 2 NC_037329.1 (88833500..89024391)

    Chromosome 2 - NC_037329.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132343175 Neighboring gene histone cluster 2, H3d Neighboring gene potassium channel tetramerization domain containing 18 Neighboring gene shugoshin 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037329.1 Chromosome 2 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SPATS2-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001192987.1 → NP_001179916.1  SPATS2-like protein

      See identical proteins and their annotated locations for NP_001179916.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000002
      UniProtKB/TrEMBL
      A0A3Q1NMR2
      Related
      ENSBTAP00070014254.1, ENSBTAT00070023987.1
      Conserved Domains (1) summary
      pfam07139
      Location:59 → 299
      DUF1387; Protein of unknown function (DUF1387)

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037329.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      88833500..89024391
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005202655.5 → XP_005202712.1  SPATS2-like protein isoform X2

      See identical proteins and their annotated locations for XP_005202712.1

      UniProtKB/TrEMBL
      A0A3Q1N1C8, A0A3Q1NMR2, F1MQ26
      Conserved Domains (1) summary
      pfam07139
      Location:59 → 368
      DUF1387; Protein of unknown function (DUF1387)

    2. XM_005202660.5 → XP_005202717.1  SPATS2-like protein isoform X4

      See identical proteins and their annotated locations for XP_005202717.1

      UniProtKB/TrEMBL
      A0A3Q1NMR2
      Conserved Domains (1) summary
      pfam07139
      Location:59 → 299
      DUF1387; Protein of unknown function (DUF1387)

    3. XM_005202653.5 → XP_005202710.1  SPATS2-like protein isoform X2

      See identical proteins and their annotated locations for XP_005202710.1

      UniProtKB/TrEMBL
      A0A3Q1N1C8, A0A3Q1NMR2, F1MQ26
      Related
      ENSBTAP00070014248.1, ENSBTAT00070023979.1
      Conserved Domains (1) summary
      pfam07139
      Location:59 → 368
      DUF1387; Protein of unknown function (DUF1387)

    4. XM_005202657.5 → XP_005202714.1  SPATS2-like protein isoform X2

      See identical proteins and their annotated locations for XP_005202714.1

      UniProtKB/TrEMBL
      A0A3Q1N1C8, A0A3Q1NMR2, F1MQ26
      Conserved Domains (1) summary
      pfam07139
      Location:59 → 368
      DUF1387; Protein of unknown function (DUF1387)

    5. XM_005202652.5 → XP_005202709.1  SPATS2-like protein isoform X1

      UniProtKB/TrEMBL
      A0A3Q1NMR2
      Conserved Domains (1) summary
      pfam07139
      Location:111 → 419
      DUF1387; Protein of unknown function (DUF1387)

    6. XM_005202659.5 → XP_005202716.1  SPATS2-like protein isoform X3

      UniProtKB/TrEMBL
      A0A3Q1MSP6, A0A3Q1NMR2
      Conserved Domains (2) summary
      pfam07139
      Location:111 → 350
      DUF1387; Protein of unknown function (DUF1387)
      pfam07798
      Location:194 → 331
      DUF1640; Protein of unknown function (DUF1640)

    7. XM_005202658.4 → XP_005202715.1  SPATS2-like protein isoform X2

      See identical proteins and their annotated locations for XP_005202715.1

      UniProtKB/TrEMBL
      A0A3Q1N1C8, A0A3Q1NMR2, F1MQ26
      Conserved Domains (1) summary
      pfam07139
      Location:59 → 368
      DUF1387; Protein of unknown function (DUF1387)

    8. XM_024976697.2 → XP_024832465.1  SPATS2-like protein isoform X4

      UniProtKB/TrEMBL
      A0A3Q1NMR2
      Conserved Domains (1) summary
      pfam07139
      Location:59 → 299
      DUF1387; Protein of unknown function (DUF1387)

    9. XM_024976707.2 → XP_024832475.1  SPATS2-like protein isoform X2

      UniProtKB/TrEMBL
      A0A3Q1N1C8, A0A3Q1NMR2, F1MQ26
      Related
      ENSBTAP00070014237.1, ENSBTAT00070023957.1
      Conserved Domains (1) summary
      pfam07139
      Location:59 → 368
      DUF1387; Protein of unknown function (DUF1387)
    Nucleotide Protein Strain
    Heading Accession and Version

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