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    DDX23 DEAD-box helicase 23 [ Bos taurus (domestic cattle) ]

    Gene ID: 537395, updated on 30-Jan-2025

    Summary

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    Official Symbol
    DDX23provided by VGNC
    Official Full Name
    DEAD-box helicase 23provided by VGNC
    Primary source
    VGNC:VGNC:27959
    See related
    BGD:BT10749; EnsemblRapid:ENSBTAG00070005614
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See DDX23 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (30934327..30948938)

    Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132345268 Neighboring gene Rho family GTPase 1 Neighboring gene calcium voltage-gated channel auxiliary subunit beta 3 Neighboring gene uncharacterized LOC132345269 Neighboring gene adenylate cyclase 6

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC152630

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable ATP-dependent RNA helicase DDX23
    Names
    DEAD (Asp-Glu-Ala-Asp) box polypeptide 23
    NP_001095672.1
    XP_005206367.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001102202.1 → NP_001095672.1  probable ATP-dependent RNA helicase DDX23

      See identical proteins and their annotated locations for NP_001095672.1

      Status: PROVISIONAL

      Source sequence(s)
      BC147902
      UniProtKB/TrEMBL
      A0AAA9T327, A6QLB2
      Related
      ENSBTAP00070007410.1, ENSBTAT00070012927.1
      Conserved Domains (3) summary
      COG0513
      Location:379 → 783
      SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
      cl25887
      Location:72 → 210
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cl26511
      Location:4 → 351
      Neuromodulin_N; Gap junction protein N-terminal region

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      30934327..30948938
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005206310.5 → XP_005206367.1  probable ATP-dependent RNA helicase DDX23 isoform X1

      See identical proteins and their annotated locations for XP_005206367.1

      UniProtKB/TrEMBL
      A0AAA9T327, A6QLB2
      Conserved Domains (3) summary
      COG0513
      Location:379 → 783
      SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
      cl25887
      Location:72 → 210
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cl26511
      Location:4 → 351
      Neuromodulin_N; Gap junction protein N-terminal region
    Nucleotide Protein Strain
    Heading Accession and Version

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