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    IL13RA1 interleukin 13 receptor subunit alpha 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 407110, updated on 27-Dec-2024

    Summary

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    Official Symbol
    IL13RA1provided by VGNC
    Official Full Name
    interleukin 13 receptor subunit alpha 1provided by VGNC
    Primary source
    VGNC:VGNC:55053
    See related
    Ensembl:ENSBTAG00000019338
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See IL13RA1 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) X NC_037357.1 (3168805..3246931)

    Chromosome X - NC_037357.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112445050 Neighboring gene dedicator of cytokinesis protein 11-like Neighboring gene small nucleolar RNA SNORA35 Neighboring gene microRNA mir-2285ci Neighboring gene transfer RNA cysteine (anticodon ACA) Neighboring gene zinc finger CCHC-type containing 12

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037357.1 Chromosome X Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Functional implications for signaling via the IL4R/IL13R complex on bovine cells. Trigona WL, et al. Vet Immunol Immunopathol, 1999 Dec 15. PMID 10614495
    2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cytokine receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytokine-mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in external side of plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    interleukin-13 receptor subunit alpha-1
    Names
    interleukin 13 receptor, alpha 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001206677.2 → NP_001193606.1  interleukin-13 receptor subunit alpha-1 precursor

      See identical proteins and their annotated locations for NP_001193606.1

      Status: VALIDATED

      Source sequence(s)
      EE332742, EH182203, NKLS02000030
      UniProtKB/TrEMBL
      G3X7E9
      Related
      ENSBTAP00000025754.7, ENSBTAT00000025754.7
      Conserved Domains (2) summary
      cd00063
      Location:225 → 333
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam09240
      Location:126 → 221
      IL6Ra-bind; Interleukin-6 receptor alpha chain, binding

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037357.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      3168805..3246931
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059883296.1 → XP_059739279.1  interleukin-13 receptor subunit alpha-1 isoform X1

      UniProtKB/TrEMBL
      G3X7E9
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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