U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ACSS2 acyl-CoA synthetase short chain family member 2 [ Bos taurus (domestic cattle) ]

    Gene ID: 506459, updated on 27-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ACSS2provided by VGNC
    Official Full Name
    acyl-CoA synthetase short chain family member 2provided by VGNC
    Primary source
    VGNC:VGNC:25571
    See related
    BGD:BT12407; Ensembl:ENSBTAG00000013303
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ACSS2 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 13 NC_037340.1 (64186778..64233570)

    Chromosome 13 - NC_037340.1Genomic Context describing neighboring genes Neighboring gene nuclear receptor coactivator 6 Neighboring gene small ribosomal subunit protein eS1-like Neighboring gene gamma-glutamyltransferase 7 Neighboring gene glutathione synthetase Neighboring gene myosin heavy chain 7B Neighboring gene microRNA mir-499

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037340.1 Chromosome 13 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

    Go to the top of the page

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acetate-CoA ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in acetyl-CoA biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    acetyl-coenzyme A synthetase, cytoplasmic
    NP_001098809.1
    XP_005214643.1
    XP_010809711.1
    XP_024856175.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001105339.1 → NP_001098809.1  acetyl-coenzyme A synthetase, cytoplasmic

      See identical proteins and their annotated locations for NP_001098809.1

      Status: PROVISIONAL

      Source sequence(s)
      BC134532
      UniProtKB/TrEMBL
      A7YWF1, F6PR38
      Related
      ENSBTAP00000017694.6, ENSBTAT00000017694.7
      Conserved Domains (2) summary
      cd05966
      Location:51 → 685
      ACS; Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)
      PRK00174
      Location:31 → 692
      PRK00174; acetyl-CoA synthetase; Provisional

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037340.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      64186778..64233570
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010811409.4 → XP_010809711.1  acetyl-coenzyme A synthetase, cytoplasmic isoform X2

      UniProtKB/TrEMBL
      A0A3Q1MB37
      Conserved Domains (2) summary
      cd05966
      Location:51 → 673
      ACS; Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)
      PRK00174
      Location:31 → 673
      PRK00174; acetyl-CoA synthetase; Provisional

    2. XM_005214586.4 → XP_005214643.1  acetyl-coenzyme A synthetase, cytoplasmic isoform X1

      See identical proteins and their annotated locations for XP_005214643.1

      UniProtKB/TrEMBL
      A0A3Q1MB37
      Related
      ENSBTAP00000067480.2, ENSBTAT00000078990.2
      Conserved Domains (2) summary
      cd05966
      Location:51 → 698
      ACS; Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)
      PRK00174
      Location:31 → 705
      PRK00174; acetyl-CoA synthetase; Provisional

    3. XM_025000407.2 → XP_024856175.1  acetyl-coenzyme A synthetase, cytoplasmic isoform X3

      UniProtKB/TrEMBL
      F6PR38
      Conserved Domains (1) summary
      cd05966
      Location:51 → 660
      ACS; Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials