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    SLC43A1 solute carrier family 43 member 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 614153, updated on 27-Dec-2024

    Summary

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    Official Symbol
    SLC43A1provided by VGNC
    Official Full Name
    solute carrier family 43 member 1provided by VGNC
    Primary source
    VGNC:VGNC:106933
    See related
    Ensembl:ENSBTAG00000051230
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See SLC43A1 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 15 NC_037342.1 (80743589..80774019, complement)

    Chromosome 15 - NC_037342.1Genomic Context describing neighboring genes Neighboring gene reticulon 4 receptor like 2 Neighboring gene uncharacterized LOC101903906 Neighboring gene uncharacterized LOC132342372 Neighboring gene large ribosomal subunit protein uL4-like Neighboring gene translocase of inner mitochondrial membrane 10

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037342.1 Chromosome 15 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Dominette sequence data
    • BioProject: PRJNA294306
    • Analysis date: Tue Dec 17 08:57:05 2024

    Bibliography

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    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables L-amino acid transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables neutral L-amino acid transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in neutral amino acid transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    large neutral amino acids transporter small subunit 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001206598.1 → NP_001193527.1  large neutral amino acids transporter small subunit 3

      See identical proteins and their annotated locations for NP_001193527.1

      Status: VALIDATED

      Source sequence(s)
      BE755420, BF041208, BM088049, CB444868, DT893766, DT899851
      UniProtKB/TrEMBL
      A0A3Q1MUY6
      Related
      ENSBTAP00000074547.1, ENSBTAT00000072259.1
      Conserved Domains (1) summary
      cl26865
      Location:75 → 235
      MFS_1; Major Facilitator Superfamily

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037342.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      80743589..80774019 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024975524.2 → XP_024831292.1  large neutral amino acids transporter small subunit 3 isoform X1

      Conserved Domains (2) summary
      cd06174
      Location:75 → 219
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
      pfam04592
      Location:344 → 416
      SelP_N; Selenoprotein P, N terminal region

    2. XM_024975523.2 → XP_024831291.1  large neutral amino acids transporter small subunit 3 isoform X1

      Conserved Domains (2) summary
      cd06174
      Location:75 → 219
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
      pfam04592
      Location:344 → 416
      SelP_N; Selenoprotein P, N terminal region

    3. XM_024975525.2 → XP_024831293.1  large neutral amino acids transporter small subunit 3 isoform X2

      UniProtKB/TrEMBL
      A0A3Q1MUY6
      Conserved Domains (1) summary
      cl26865
      Location:75 → 235
      MFS_1; Major Facilitator Superfamily

    4. XM_024975526.2 → XP_024831294.1  large neutral amino acids transporter small subunit 3 isoform X2

      UniProtKB/TrEMBL
      A0A3Q1MUY6
      Conserved Domains (1) summary
      cl26865
      Location:75 → 235
      MFS_1; Major Facilitator Superfamily

    5. XM_059874955.1 → XP_059730938.1  large neutral amino acids transporter small subunit 3 isoform X1

    6. XM_059874957.1 → XP_059730940.1  large neutral amino acids transporter small subunit 3 isoform X4

    7. XM_059874956.1 → XP_059730939.1  large neutral amino acids transporter small subunit 3 isoform X3

    8. XM_059874958.1 → XP_059730941.1  large neutral amino acids transporter small subunit 3 isoform X5

    RNA

    1. XR_009490586.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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