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    Cldn34-ps claudin 34, pseudogene [ Mus musculus (house mouse) ]

    Gene ID: 628893, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Cldn34-psprovided by MGI
    Official Full Name
    claudin 34, pseudogeneprovided by MGI
    Primary source
    MGI:MGI:3645962
    See related
    Ensembl:ENSMUSG00000087152 Ensembl:ENSMUSG00000133207 AllianceGenome:MGI:3645962
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm6927; EG628893
    Summary
    Orthologous to human CLDN34 (claudin 34). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward testis adult (RPKM 1.3) See more
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    Genomic context

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    See Cldn34-ps in Genome Data Viewer
    Location:
    X B; X 38.31 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (76718275..76734904, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (77674669..77691298, complement)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene predicted gene 5937 Neighboring gene STARR-seq mESC enhancer starr_47413 Neighboring gene transducin (beta)-like 1 X-linked Neighboring gene STARR-seq mESC enhancer starr_47415 Neighboring gene predicted gene, 52447 Neighboring gene STARR-seq mESC enhancer starr_47416 Neighboring gene SET translocation pseudogene Neighboring gene ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC628893
    Names
    predicted pseudogene 6927

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001101585.1 → NP_001095055.1  uncharacterized protein LOC628893

      See identical proteins and their annotated locations for NP_001095055.1

      Status: PREDICTED

      Source sequence(s)
      CH466576
      Related
      ENSMUST00000145498.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      76718275..76734904 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006528229.1 → XP_006528292.1  uncharacterized protein LOC628893 isoform X1

      See identical proteins and their annotated locations for XP_006528292.1

      Related
      ENSMUST00000316587.1

    2. XM_017318591.1 → XP_017174080.1  uncharacterized protein LOC628893 isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

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