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    Snapc5 small nuclear RNA activating complex, polypeptide 5 [ Mus musculus (house mouse) ]

    Gene ID: 330959, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Snapc5provided by MGI
    Official Full Name
    small nuclear RNA activating complex, polypeptide 5provided by MGI
    Primary source
    MGI:MGI:1914282
    See related
    Ensembl:ENSMUSG00000032398 AllianceGenome:MGI:1914282
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2010103A03Rik
    Summary
    Predicted to enable RNA polymerase II general transcription initiation factor activity and RNA polymerase III general transcription initiation factor activity. Predicted to be involved in snRNA transcription by RNA polymerase II; snRNA transcription by RNA polymerase III; and transcription initiation at RNA polymerase III promoter. Predicted to be located in nuclear body and nucleolus. Is expressed in genitourinary system. Orthologous to human SNAPC5 (small nuclear RNA activating complex polypeptide 5). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in bladder adult (RPKM 24.6), CNS E11.5 (RPKM 14.0) and 28 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Snapc5 in Genome Data Viewer
    Location:
    9 C; 9 34.54 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (64086066..64089972)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (64179297..64182688)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:64027060-64027169 Neighboring gene STARR-seq mESC enhancer starr_24421 Neighboring gene predicted gene, 23136 Neighboring gene predicted gene, 22455 Neighboring gene ribosomal protein L4 Neighboring gene mitogen-activated protein kinase kinase 1 Neighboring gene STARR-seq mESC enhancer starr_24422 Neighboring gene STARR-seq mESC enhancer starr_24424 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:64075662-64075771 Neighboring gene STARR-positive B cell enhancer ABC_E8856 Neighboring gene ubiquitin carboxyl-terminal esterase L4 Neighboring gene STARR-positive B cell enhancer ABC_E2293 Neighboring gene STARR-seq mESC enhancer starr_24425 Neighboring gene STARR-seq mESC enhancer starr_24427 Neighboring gene STARR-positive B cell enhancer ABC_E6754 Neighboring gene timeless interacting protein Neighboring gene predicted gene, 24289

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. In vitro selection of Jun-associated proteins using mRNA display. Horisawa K, et al. Nucleic Acids Res, 2004 Dec 2. PMID 15576676, Free PMC Article
    2. Cell-free cotranslation and selection using in vitro virus for high-throughput analysis of protein-protein interactions and complexes. Miyamoto-Sato E, et al. Genome Res, 2005 May. PMID 15867431, Free PMC Article
    3. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
    4. GUDMAP: the genitourinary developmental molecular anatomy project. McMahon AP, et al. J Am Soc Nephrol, 2008 Apr. PMID 18287559
    5. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249

    See all (18) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables RNA polymerase II general transcription initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables RNA polymerase III general transcription initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in snRNA transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in snRNA transcription by RNA polymerase III IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in transcription initiation at RNA polymerase III promoter IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nuclear body IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nuclear body ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    snRNA-activating protein complex subunit 5
    Names
    SNAPc 19 kDa subunit
    SNAPc subunit 5
    small nuclear RNA activating complex, polypeptide 5, 19kDa
    snRNA-activating protein complex 19 kDa subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_183316.3 → NP_899139.2  snRNA-activating protein complex subunit 5

      See identical proteins and their annotated locations for NP_899139.2

      Status: VALIDATED

      Source sequence(s)
      AC160118
      Consensus CDS
      CCDS23276.1
      UniProtKB/Swiss-Prot
      E9QPK5, Q8R2K7
      Related
      ENSMUSP00000034965.7, ENSMUST00000034965.8
      Conserved Domains (1) summary
      pfam15497
      Location:8 → 82
      SNAPc19; snRNA-activating protein complex subunit 19, SNAPc subunit 19

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      64086066..64089972
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036155085.1 → XP_036010978.1  snRNA-activating protein complex subunit 5 isoform X1

      UniProtKB/Swiss-Prot
      E9QPK5, Q8R2K7
      Conserved Domains (1) summary
      pfam15497
      Location:8 → 82
      SNAPc19; snRNA-activating protein complex subunit 19, SNAPc subunit 19
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8R2K7.2 GenPept UniProtKB/Swiss-Prot:Q8R2K7

    Gene LinkOut

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