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    Rny3 RNA, Y3 small cytoplasmic (associated with Ro protein) [ Mus musculus (house mouse) ]

    Gene ID: 19874, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Rny3provided by MGI
    Official Full Name
    RNA, Y3 small cytoplasmic (associated with Ro protein)provided by MGI
    Primary source
    MGI:MGI:107304
    See related
    Ensembl:ENSMUSG00000064945 AllianceGenome:MGI:107304
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Acts upstream of or within DNA replication initiation and nuclear DNA replication. [provided by Alliance of Genome Resources, Dec 2024]
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    Genomic context

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    See Rny3 in Genome Data Viewer
    Location:
    6 B2.3; 6 22.94 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (47758558..47758658)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (47781624..47781724)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer mm9_chr6:47636636-47636937 Neighboring gene predicted gene, 40363 Neighboring gene predicted gene, 52861 Neighboring gene STARR-positive B cell enhancer ABC_E2783 Neighboring gene STARR-positive B cell enhancer ABC_E438 Neighboring gene ribosomal protein L31, pseudogene 7 Neighboring gene RNA, Y1 small cytoplasmic, Ro-associated

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Y RNA functions at the initiation step of mammalian chromosomal DNA replication. Krude T, et al. J Cell Sci, 2009 Aug 15. PMID 19657016
    2. Ro60 requires Y3 RNA for cell surface exposure and inflammation associated with cardiac manifestations of neonatal lupus. Reed JH, et al. J Immunol, 2013 Jul 1. PMID 23698747, Free PMC Article
    3. Genes for murine Y1 and Y3 Ro RNAs have class 3 RNA polymerase III promoter structures and are unlinked on mouse chromosome 6. Farris AD, et al. Gene, 1996 Sep 26. PMID 8863726
    4. Mapping of the mouse corticotropin-releasing hormone receptor 2 gene (Crhr2) to chromosome 6. Lesh JS, et al. Mamm Genome, 1997 Dec. PMID 9383293

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA replication initiation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within nuclear DNA replication IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_024202.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC166252
      Related
      ENSMUST00000083011.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      47758558..47758658
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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