U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Sowahb sosondowah ankyrin repeat domain family member B [ Mus musculus (house mouse) ]

    Gene ID: 78088, updated on 9-Dec-2024

    Summary

    Official Symbol
    Sowahbprovided by MGI
    Official Full Name
    sosondowah ankyrin repeat domain family member Bprovided by MGI
    Primary source
    MGI:MGI:1925338
    See related
    Ensembl:ENSMUSG00000045314 AllianceGenome:MGI:1925338
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ankrd56; 5730467H21Rik
    Summary
    Is expressed in embryo endoderm; eye; inner ear; and trunk somite. Orthologous to human SOWAHB (sosondowah ankyrin repeat domain family member B). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Sowahb in Genome Data Viewer
    Location:
    5 E2; 5 47.29 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (93188981..93192910, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (93041123..93045022, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_13662 Neighboring gene predicted gene, 25521 Neighboring gene STARR-seq mESC enhancer starr_13663 Neighboring gene predicted gene, 52780 Neighboring gene predicted gene, 22915 Neighboring gene septin 11 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:93522357-93522466 Neighboring gene STARR-seq mESC enhancer starr_13664 Neighboring gene VISTA enhancer mm39

    Genomic regions, transcripts, and products

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Chemically induced (ENU) (1)  1 citation
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    ankyrin repeat domain-containing protein SOWAHB
    Names
    ankyrin repeat domain 56
    ankyrin repeat domain-containing protein 56
    protein sosondowah homolog B

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_175270.5NP_780479.1  ankyrin repeat domain-containing protein SOWAHB

      See identical proteins and their annotated locations for NP_780479.1

      Status: VALIDATED

      Source sequence(s)
      AC125233
      Consensus CDS
      CCDS19435.1
      UniProtKB/Swiss-Prot
      Q8BZS7, Q8BZW2
      Related
      ENSMUSP00000055267.6, ENSMUST00000061328.6
      Conserved Domains (3) summary
      cd00204
      Location:597674
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam13637
      Location:598657
      Ank_4; Ankyrin repeats (many copies)
      sd00045
      Location:598634
      ANK; ANK repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      93188981..93192910 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)