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    Slc38a11 solute carrier family 38, member 11 [ Mus musculus (house mouse) ]

    Gene ID: 320106, updated on 9-Dec-2024

    Summary

    Official Symbol
    Slc38a11provided by MGI
    Official Full Name
    solute carrier family 38, member 11provided by MGI
    Primary source
    MGI:MGI:2443383
    See related
    Ensembl:ENSMUSG00000061171 AllianceGenome:MGI:2443383
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    9330158F14Rik
    Summary
    Predicted to enable L-amino acid transmembrane transporter activity. Predicted to be involved in amino acid transmembrane transport. Predicted to be active in membrane. Is expressed in cerebellum; ductus deferens; epididymis; ileum; and midbrain. Orthologous to human SLC38A11 (solute carrier family 38 member 11). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Broad expression in adrenal adult (RPKM 1.8), bladder adult (RPKM 0.8) and 17 other tissues See more
    Orthologs
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    Genomic context

    See Slc38a11 in Genome Data Viewer
    Location:
    2 C1.3; 2 38.47 cM
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (65144007..65194606, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (65313663..65364026, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene predicted gene 13593 Neighboring gene STARR-positive B cell enhancer ABC_E2620 Neighboring gene STARR-seq mESC enhancer starr_04671 Neighboring gene microRNA 6337 Neighboring gene predicted gene, 24138

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3)  1 citation
    • Targeted (3) 

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables L-amino acid transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in amino acid transmembrane transport IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in amino acid transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in sodium ion transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    putative sodium-coupled neutral amino acid transporter 11

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_177074.2NP_796048.2  putative sodium-coupled neutral amino acid transporter 11

      See identical proteins and their annotated locations for NP_796048.2

      Status: VALIDATED

      Source sequence(s)
      AK139966, CJ055756
      Consensus CDS
      CCDS38129.1
      UniProtKB/Swiss-Prot
      A2ASI0, A2ASI1, Q3USY0
      UniProtKB/TrEMBL
      F6X0X3
      Related
      ENSMUSP00000108039.2, ENSMUST00000112420.8
      Conserved Domains (2) summary
      COG0814
      Location:39413
      SdaC; Amino acid permease [Amino acid transport and metabolism]
      cl00456
      Location:32420
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      65144007..65194606 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036162296.1XP_036018189.1  putative sodium-coupled neutral amino acid transporter 11 isoform X1

      UniProtKB/TrEMBL
      F6WJL8
      Conserved Domains (1) summary
      cl00456
      Location:32398
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
    2. XM_036162297.1XP_036018190.1  putative sodium-coupled neutral amino acid transporter 11 isoform X2

      Conserved Domains (1) summary
      cl00456
      Location:24223
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
    3. XM_036162298.1XP_036018191.1  putative sodium-coupled neutral amino acid transporter 11 isoform X3

      Conserved Domains (1) summary
      cl00456
      Location:1192
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
    4. XM_030251752.1XP_030107612.1  putative sodium-coupled neutral amino acid transporter 11 isoform X3

      Conserved Domains (1) summary
      cl00456
      Location:1192
      SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain