U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    A330008L17Rik RIKEN cDNA A330008L17 gene [ Mus musculus (house mouse) ]

    Gene ID: 234624, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    A330008L17Rikprovided by MGI
    Official Full Name
    RIKEN cDNA A330008L17 geneprovided by MGI
    Primary source
    MGI:MGI:2443215
    See related
    Ensembl:ENSMUSG00000052479 AllianceGenome:MGI:2443215
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Is expressed in cerebral cortex subventricular zone and thymus primordium. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See A330008L17Rik in Genome Data Viewer
    Location:
    8 D1; 8 49.57 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (100143306..100460070)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (99416674..99733438)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene cadherin 8 Neighboring gene predicted gene, 24693 Neighboring gene protein phosphatase 4, regulatory subunit 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_22450 Neighboring gene STARR-seq mESC enhancer starr_22451 Neighboring gene STARR-seq mESC enhancer starr_22453 Neighboring gene STARR-seq mESC enhancer starr_22454 Neighboring gene STARR-seq mESC enhancer starr_22455 Neighboring gene STARR-seq mESC enhancer starr_22456 Neighboring gene STARR-seq mESC enhancer starr_22457 Neighboring gene STARR-seq mESC enhancer starr_22458 Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_22459 Neighboring gene STARR-seq mESC enhancer starr_22461 Neighboring gene inosine monophosphate dehydrogenase 2, pseudogene

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The Epigenetic Factor Landscape of Developing Neocortex Is Regulated by Transcription Factors Pax6→ Tbr2→ Tbr1. Elsen GE, et al. Front Neurosci, 2018. PMID 30186101, Free PMC Article
    2. Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Bedogni F, et al. Front Mol Neurosci, 2021. PMID 34321999, Free PMC Article
    3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_132435.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK042807
      Related
      ENSMUST00000153366.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      100143306..100460070
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_175479.3: Suppressed sequence

      Description
      NM_175479.3: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.