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    Lrrc9 leucine rich repeat containing 9 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 299129, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Lrrc9provided by RGD
    Official Full Name
    leucine rich repeat containing 9provided by RGD
    Primary source
    RGD:1565716
    See related
    EnsemblRapid:ENSRNOG00000005409 AllianceGenome:RGD:1565716
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1565716
    Summary
    Predicted to be located in cytoplasm. Orthologous to human LRRC9 (leucine rich repeat containing 9). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 76.5), Lung (RPKM 6.6) and 1 other tissue See more
    Orthologs
    human mouse all
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    Genomic context

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    See Lrrc9 in Genome Data Viewer
    Location:
    6q24
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (96746972..96831840)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (91017739..91095847)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (95205131..95290848)

    Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134479399 Neighboring gene ribosomal protein L36A, pseudogene 20 Neighboring gene uncharacterized LOC102549502 Neighboring gene pecanex 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    leucine-rich repeat-containing protein 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001191613.1 → NP_001178542.1  leucine-rich repeat-containing protein 9

      See identical proteins and their annotated locations for NP_001178542.1

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000006
      UniProtKB/TrEMBL
      A6HC36
      Conserved Domains (3) summary
      sd00033
      Location:709 → 730
      LRR_RI; leucine-rich repeat [structural motif]
      NF033189
      Location:685 → 1014
      internalin_A; class 1 internalin InlA
      cd21340
      Location:85 → 236
      PPP1R42; protein phosphatase 1 regulatory subunit 42

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086024.1 Reference GRCr8

      Range
      96746972..96831840
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063261711.1 → XP_063117781.1  leucine-rich repeat-containing protein 9 isoform X1

      UniProtKB/TrEMBL
      A6HC36

    2. XM_039111997.2 → XP_038967925.1  leucine-rich repeat-containing protein 9 isoform X1

      UniProtKB/TrEMBL
      A6HC36
      Conserved Domains (3) summary
      sd00033
      Location:709 → 730
      LRR_RI; leucine-rich repeat [structural motif]
      NF033189
      Location:685 → 1014
      internalin_A; class 1 internalin InlA
      cd21340
      Location:85 → 236
      PPP1R42; protein phosphatase 1 regulatory subunit 42

    RNA

    1. XR_005505474.2 RNA Sequence

    2. XR_005505472.2 RNA Sequence

      Related
      ENSRNOT00000007339.9

    3. XR_005505473.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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