U.S. flag

An official website of the United States government

Links from GEO Profiles

    • Showing Current items.

    Prr13 proline rich 13 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 363004, updated on 9-Dec-2024

    Summary

    Official Symbol
    Prr13provided by RGD
    Official Full Name
    proline rich 13provided by RGD
    Primary source
    RGD:1307129
    See related
    EnsemblRapid:ENSRNOG00000042094 AllianceGenome:RGD:1307129
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1307129
    Summary
    Predicted to be located in cytosol. Predicted to be active in nucleoplasm. Orthologous to human PRR13 (proline rich 13). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Thymus (RPKM 181.8), Spleen (RPKM 174.5) and 9 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Prr13 in Genome Data Viewer
    Location:
    7q36
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (135471040..135474344)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (133592511..133595817)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (144064931..144068235)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene Sp1 transcription factor Neighboring gene uncharacterized LOC134479584 Neighboring gene anti-Mullerian hormone receptor type 2 Neighboring gene poly(rC) binding protein 2 Neighboring gene mitogen activated protein kinase kinase kinase 12 Neighboring gene Tarbp2 subunit of RISC loading complex

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Clone Names

    • MGC105664

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in cytosol  
    is_active_in nucleoplasm  
    located_in nucleoplasm  

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001008379.1NP_001008380.1  proline-rich protein 13

      See identical proteins and their annotated locations for NP_001008380.1

      Status: PROVISIONAL

      Source sequence(s)
      BC086446
      UniProtKB/Swiss-Prot
      Q5U1W2
      UniProtKB/TrEMBL
      A6KCV4
      Related
      ENSRNOP00000048789.5, ENSRNOT00000048504.7

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      135471040..135474344
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    External link. Please review our privacy policy.