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    LINC02415 long intergenic non-protein coding RNA 2415 [ Homo sapiens (human) ]

    Gene ID: 107161159, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC02415provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2415provided by HGNC
    Primary source
    HGNC:HGNC:53344
    See related
    Ensembl:ENSG00000248703 AllianceGenome:HGNC:53344
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in testis (RPKM 3.2), thyroid (RPKM 0.7) and 1 other tissue See more
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    Genomic context

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    See LINC02415 in Genome Data Viewer
    Location:
    12q24.33
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (131296113..131297972, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (131337852..131339711, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (131780658..131782517, complement)

    Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107987177 Neighboring gene ribosomal protein S6 pseudogene 20 Neighboring gene uncharacterized LOC100128002 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:131781630-131782330 Neighboring gene RNA, 5S ribosomal pseudogene 376 Neighboring gene uncharacterized LOC124903055 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:131795285-131796186 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:131796187-131797088

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_135045.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC092850
      Related
      ENST00000508505.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

      Range
      131296113..131297972 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060936.1 Alternate T2T-CHM13v2.0

      Range
      131337852..131339711 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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