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    LOC100507464 uncharacterized LOC100507464 [ Homo sapiens (human) ]

    Gene ID: 100507464, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC100507464
    Gene description
    uncharacterized LOC100507464
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 1.0) See more
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    Genomic context

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    See LOC100507464 in Genome Data Viewer
    Location:
    8q11.21
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (49496763..49512180, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (49874570..49889999, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (50409322..50424739, complement)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19185 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr8:50291207-50292406 Neighboring gene RN7SK pseudogene 294 Neighboring gene ret finger protein like 4A pseudogene 7 Neighboring gene NANOG hESC enhancer GRCh37_chr8:50516568-50517170 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:50568577-50569776 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:50629145-50629825 Neighboring gene phosphoserine aminotransferase 1 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:50755104-50755652 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:50754554-50755103 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:50822872-50823816 Neighboring gene syntrophin gamma 1 Neighboring gene NANOG hESC enhancer GRCh37_chr8:50969100-50969624 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:51066297-51066804 Neighboring gene uncharacterized LOC124900619 Neighboring gene uncharacterized LOC105375829

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_134294.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC090155, AW103845

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      49496763..49512180 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      49874570..49889999 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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