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    C2cd4d C2 calcium-dependent domain containing 4D [ Mus musculus (house mouse) ]

    Gene ID: 271944, updated on 9-Dec-2024

    Summary

    Official Symbol
    C2cd4dprovided by MGI
    Official Full Name
    C2 calcium-dependent domain containing 4Dprovided by MGI
    Primary source
    MGI:MGI:2685505
    See related
    Ensembl:ENSMUSG00000091648 AllianceGenome:MGI:2685505
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm659
    Summary
    Orthologous to human C2CD4D (C2 calcium dependent domain containing 4D). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in thymus adult (RPKM 10.2), ovary adult (RPKM 3.3) and 13 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See C2cd4d in Genome Data Viewer
    Location:
    3 F2.1; 3 40.55 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (94269720..94271874)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (94362444..94364567)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene thioesterase superfamily member 4 Neighboring gene predicted gene, 52664 Neighboring gene STARR-seq mESC enhancer starr_08346 Neighboring gene thioesterase superfamily member 5 Neighboring gene STARR-seq mESC enhancer starr_08347 Neighboring gene STARR-positive B cell enhancer mm9_chr3:94170729-94171030 Neighboring gene predicted gene, 38411 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:94181128-94181237 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:94181285-94181542 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:94186335-94186518 Neighboring gene RAR-related orphan receptor gamma Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:94191975-94192234

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General protein information

    Preferred Names
    C2 calcium-dependent domain-containing protein 4D

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001136117.2NP_001129589.1  C2 calcium-dependent domain-containing protein 4D

      See identical proteins and their annotated locations for NP_001129589.1

      Status: VALIDATED

      Source sequence(s)
      AC164562
      Consensus CDS
      CCDS50983.1
      UniProtKB/Swiss-Prot
      P0CG09
      Related
      ENSMUSP00000128182.2, ENSMUST00000169433.3
      Conserved Domains (1) summary
      smart00239
      Location:221321
      C2; Protein kinase C conserved region 2 (CalB)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      94269720..94271874
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)