U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    D630039A03Rik RIKEN cDNA D630039A03 gene [ Mus musculus (house mouse) ]

    Gene ID: 242484, updated on 9-Dec-2024

    Summary

    Official Symbol
    D630039A03Rikprovided by MGI
    Official Full Name
    RIKEN cDNA D630039A03 geneprovided by MGI
    Primary source
    MGI:MGI:2442889
    See related
    Ensembl:ENSMUSG00000052117 AllianceGenome:MGI:2442889
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Is expressed in gonad; ovary; and testis. Orthologous to human C9orf152 (chromosome 9 open reading frame 152). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in colon adult (RPKM 10.4), large intestine adult (RPKM 7.6) and 13 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See D630039A03Rik in Genome Data Viewer
    Location:
    4 B3; 4 31.87 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (57908384..57916264, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (57908384..57916264, complement)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene paralemmin A kinase anchor protein Neighboring gene STARR-seq mESC enhancer starr_10341 Neighboring gene predicted gene, 35099 Neighboring gene STARR-seq mESC enhancer starr_10342 Neighboring gene STARR-seq mESC enhancer starr_10344 Neighboring gene STARR-positive B cell enhancer mm9_chr4:57794869-57795170 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:57825880-57826033 Neighboring gene STARR-positive B cell enhancer ABC_E9586 Neighboring gene VISTA enhancer mm261 Neighboring gene STARR-seq mESC enhancer starr_10349 Neighboring gene STARR-positive B cell enhancer mm9_chr4:57893009-57893310 Neighboring gene predicted gene, 26138 Neighboring gene STARR-seq mESC enhancer starr_10351 Neighboring gene predicted gene, 42293 Neighboring gene predicted gene, 42292

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein C9orf152 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_178727.2NP_848842.1  uncharacterized protein C9orf152 homolog

      See identical proteins and their annotated locations for NP_848842.1

      Status: PROVISIONAL

      Source sequence(s)
      BC095953
      Consensus CDS
      CCDS18206.1
      UniProtKB/TrEMBL
      Q8BHF6, Q8CCC2, Q8K0M7
      Related
      ENSMUSP00000068932.6, ENSMUST00000063816.6
      Conserved Domains (1) summary
      pfam15733
      Location:41163
      DUF4682; Domain of unknown function (DUF4682)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      57908384..57916264 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)