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    AGL44 AGAMOUS-like 44 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 815907, updated on 18-Sep-2024

    Summary

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    Official Symbol
    AGL44
    Official Full Name
    AGAMOUS-like 44
    Primary source
    TAIR:AT2G14210
    Locus tag
    AT2G14210
    See related
    Araport:AT2G14210
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AGAMOUS-like 44; ANR1; ARABIDOPSIS NITRATE REGULATED 1; F15N24.5; F15N24_5
    Summary
    MADS box gene, transcription factor
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    Genomic context

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    See AGL44 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    9
    Sequence:
    Chromosome: 2; NC_003071.7 (6018558..6023863)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene pseudo Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Overexpressing the ANR1 MADS-box gene in transgenic plants provides new insights into its role in the nitrate regulation of root development. Gan Y, et al. Plant Cell Physiol, 2012 Jun. PMID 22523192
    2. Nitrogen regulation of root branching. Walch-Liu P, et al. Ann Bot, 2006 May. PMID 16339770, Free PMC Article
    3. Nitrate and glutamate sensing by plant roots. Filleur S, et al. Biochem Soc Trans, 2005 Feb. PMID 15667327
    4. Regulation of Arabidopsis root development by nitrate availability. Zhang H, et al. J Exp Bot, 2000 Jan. PMID 10938795
    5. An Arabidopsis MADS box gene that controls nutrient-induced changes in root architecture. Zhang H, et al. Science, 1998 Jan 16. PMID 9430595

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. ANR1 overexpression accelerates early seedling development.
      Title: Overexpressing the ANR1 MADS-box gene in transgenic plants provides new insights into its role in the nitrate regulation of root development.
    2. ANR1 expression in roots of hydroponically grown Arabidopsis plants was specifically regulated by changes in the N supply, being induced by N deprivation and rapidly repressed by N re-supply.
      Title: Nutritional regulation of ANR1 and other root-expressed MADS-box genes in Arabidopsis thaliana.
    3. There is evidence for a nitrate-dependent component of the ANR1 signalling pathway.
      Title: Nitrogen regulation of root branching.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_126990.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to nitrate IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within lateral root development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in lateral root development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in response to nitrate IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to nutrient IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    AGAMOUS-like 44
    NP_179033.1
    • AGAMOUS-like 44 (AGL44); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to nutrient, lateral root development; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 21 (TAIR:AT4G37940.1); Has 7244 Blast hits to 7231 proteins in 902 species: Archae - 0; Bacteria - 10; Metazoa - 640; Fungi - 309; Plants - 6146; Viruses - 0; Other Eukaryotes - 139 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      6018558..6023863
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001335416.1 → NP_001324071.1  AGAMOUS-like 44 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AYX0, A0A654EST6

    2. NM_126990.3 → NP_179033.1  AGAMOUS-like 44 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179033.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O49351, Q9SI38
      UniProtKB/TrEMBL
      A0A654EST6
      Conserved Domains (2) summary
      cd00265
      Location:2 → 79
      MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
      pfam01486
      Location:82 → 172
      K-box; K-box region
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SI38.1

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